IGVFFI9532SPYG

released
validation exempted
File Set
IGVFDS5448FWBW(10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix)
Summary
fragments
Analysis Step Version
File Format
tsv
Content Type
fragments
Aliases
ansuman-satpathy:igvf0_fragments_10x1
md5sum
6b201a330fd8c0e61a865cffed27dcdf
Content MD5sum
71ed749a36369bc28b09e5d2dc5921e4
File Size
5.9 GB
Submitted File Name
/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf0/e0l1_fragments.tsv.gz
Checkfiles Version
Validation Error Detail
{"tabular_file_error": {"schema": null, "error_number_limit": 1000, "number_of_errors": 1000, "extra-cell": {"count": 1000, "description": "This row has more values compared to the header row (the first row in the data source). A key concept is that all the rows in tabular data must have the same number of columns.", "details": [{"row_number": 52, "field_number": 2, "note": ""}, {"row_number": 52, "field_number": 3, "note": ""}]}, "error_types": ["extra-cell"]}}

File Format Specifications

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: GM25256 (WTC-11) differentiated cell specimen induced to endothelial cell for 3 days, male, Homo sapiens; GM25256 (WTC-11) differentiated cell specimen induced to endothelial cell for 4 days, male, Homo sapiens; ... and 21 more samples

Files This File Derives From

4 items
fastq
reads
Ansuman Satpathy, Stanford
24 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
42 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
8.5 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
44 GB
validated

Files Derived From This File

2 items
bed
peaks
GRCh38 peaks
Ansuman Satpathy, Stanford
2.5 MB
validation exempted
tbi
index
index of IGVFFI9532SPYG
Ansuman Satpathy, Stanford
1.8 MB
validated

Attribution