Home

IGVFFI9446LEJP

released
validated
File Set
IGVFDS0120EBCZ(Proliferation CRISPR base editing, cutting screen: guide quantifications, variant effects)
Summary
guide quantifications
Analysis Step Version
/analysis-step-versions/c0fbe877-fa6c-423b-8d56-e600bf8e2859/
File Format
csv
Content Type
guide quantifications
Aliases
daniel-bauer:chrX_mageck_mapped_counts
md5sum
9f830ff1d825cd5bd845e78047955048
Content MD5sum
ebb32f316c547d0ae73fe7b4c915a57c
File Size
345 KB
Submitted File Name
chrX_mageck_count_df.csv.gz
Checkfiles Version
Legacy version of checkfiles

Samples

12 items
Sample Terms
Summary
InVitroSystem
HUDEP-2 cell line, Homo sapiens modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library
InVitroSystem
HUDEP-2 cell line, Homo sapiens modified with CRISPR cutting SpRY, transduced (lentivirus) with a guide library
InVitroSystem
HUDEP-2 cell line, Homo sapiens modified with CRISPR cutting SpRY, transduced (lentivirus) with a guide library
InVitroSystem
HUDEP-2 cell line, Homo sapiens modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library
InVitroSystem
HUDEP-2 cell line, Homo sapiens modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library
InVitroSystem
HUDEP-2 cell line, Homo sapiens modified with CRISPR cutting SpRY, transduced (lentivirus) with a guide library
InVitroSystem
HUDEP-2 cell line, Homo sapiens modified with CRISPR cutting SpRY, transduced (lentivirus) with a guide library
InVitroSystem
HUDEP-2 cell line, Homo sapiens modified with CRISPR cutting SpRY, transduced (lentivirus) with a guide library
InVitroSystem
HUDEP-2 cell line, Homo sapiens modified with CRISPR cutting SpRY, transduced (lentivirus) with a guide library
InVitroSystem
HUDEP-2 cell line, Homo sapiens modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library

Files This File Derives From

24 items
fastq
reads
Daniel Bauer, HSCI
212 MB
validated
fastq
reads
Daniel Bauer, HSCI
74 MB
validated
fastq
reads
Daniel Bauer, HSCI
126 MB
validated
fastq
reads
Daniel Bauer, HSCI
70 MB
validated
fastq
reads
Daniel Bauer, HSCI
137 MB
validated
fastq
reads
Daniel Bauer, HSCI
77 MB
validated
fastq
reads
Daniel Bauer, HSCI
72 MB
validated
fastq
reads
Daniel Bauer, HSCI
79 MB
validated
fastq
reads
Daniel Bauer, HSCI
225 MB
validated
fastq
reads
Daniel Bauer, HSCI
105 MB
validated

Files Derived From This File

2 items
csv
guide quantifications
guide quantifications
Daniel Bauer, HSCI
605 KB
validated
csv
variant effects
variant effects
Daniel Bauer, HSCI
64 KB
validated

Attribution

Award
HG012010
Principal Investigator(s)
Contact P.I.
Luca Pinello
Lab
Daniel Bauer, HSCI