{
"@context": "/terms/",
"@id": "/tabular-files/IGVFFI9384YMLX/",
"@type": [
"TabularFile",
"File",
"Item"
],
"accession": "IGVFFI9384YMLX",
"aliases": [
"charles-gersbach:tabular-file-bulk-rna-count"
],
"analysis_step_version": "/analysis-step-versions/f53cadd0-3e88-4b35-ab64-8e1683998686/",
"assay_titles": [
"RNA-seq"
],
"assembly": "GRCh38",
"audit": {},
"award": {
"@id": "/awards/HG012053/",
"component": "functional characterization"
},
"barcode_map_for": [],
"content_md5sum": "9da0cf36f82b2d68220fe10742c6a60c",
"content_type": "transcript quantifications",
"controlled_access": false,
"creation_timestamp": "2024-10-24T17:16:51.749977+00:00",
"derived_from": [
"/alignment-files/IGVFFI8503OKYN/",
"/alignment-files/IGVFFI4143PXEA/",
"/alignment-files/IGVFFI1384MWUS/",
"/alignment-files/IGVFFI9276XTDU/",
"/alignment-files/IGVFFI4212KOFH/",
"/alignment-files/IGVFFI9652UDZR/"
],
"file_format": "tsv",
"file_format_specifications": [
"/documents/e74f7bee-7c62-4acb-b1f8-50160292c236/"
],
"file_set": {
"@id": "/analysis-sets/IGVFDS3461ZPPS/",
"accession": "IGVFDS3461ZPPS",
"file_set_type": "principal analysis",
"samples": [
{
"@id": "/in-vitro-systems/IGVFSM7851SPEI/",
"accession": "IGVFSM7851SPEI",
"classifications": [
"differentiated cell specimen"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0009747/",
"status": "released",
"term_name": "GM25256 (WTC-11)"
}
],
"status": "released",
"summary": "GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 28 days, male, Homo sapiens",
"targeted_sample_term": {
"@id": "/sample-terms/CL_0000746/",
"status": "released",
"term_name": "cardiac muscle cell"
},
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM2298AOEQ/",
"accession": "IGVFSM2298AOEQ",
"classifications": [
"differentiated cell specimen"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0009747/",
"status": "released",
"term_name": "GM25256 (WTC-11)"
}
],
"status": "released",
"summary": "GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 28 days, male, Homo sapiens treated with 4 μM GSK3 inhibition for 7 days",
"targeted_sample_term": {
"@id": "/sample-terms/CL_0000746/",
"status": "released",
"term_name": "cardiac muscle cell"
},
"taxa": "Homo sapiens",
"treatments": [
{
"@id": "/treatments/98ba0c5c-8005-41bc-bcbb-6c6eff41af4e/",
"purpose": "antagonist",
"status": "released",
"summary": "Treatment of 4 μM GSK3 inhibition for 7 days",
"treatment_term_name": "GSK3 inhibition"
}
]
},
{
"@id": "/in-vitro-systems/IGVFSM6721GJUT/",
"accession": "IGVFSM6721GJUT",
"classifications": [
"differentiated cell specimen"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0009747/",
"status": "released",
"term_name": "GM25256 (WTC-11)"
}
],
"status": "released",
"summary": "GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 28 days, male, Homo sapiens",
"targeted_sample_term": {
"@id": "/sample-terms/CL_0000746/",
"status": "released",
"term_name": "cardiac muscle cell"
},
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM7542AMUP/",
"accession": "IGVFSM7542AMUP",
"classifications": [
"differentiated cell specimen"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0009747/",
"status": "released",
"term_name": "GM25256 (WTC-11)"
}
],
"status": "released",
"summary": "GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 28 days, male, Homo sapiens",
"targeted_sample_term": {
"@id": "/sample-terms/CL_0000746/",
"status": "released",
"term_name": "cardiac muscle cell"
},
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM9734OHZN/",
"accession": "IGVFSM9734OHZN",
"classifications": [
"differentiated cell specimen"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0009747/",
"status": "released",
"term_name": "GM25256 (WTC-11)"
}
],
"status": "released",
"summary": "GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 28 days, male, Homo sapiens treated with 4 μM GSK3 inhibition for 7 days",
"targeted_sample_term": {
"@id": "/sample-terms/CL_0000746/",
"status": "released",
"term_name": "cardiac muscle cell"
},
"taxa": "Homo sapiens",
"treatments": [
{
"@id": "/treatments/98ba0c5c-8005-41bc-bcbb-6c6eff41af4e/",
"purpose": "antagonist",
"status": "released",
"summary": "Treatment of 4 μM GSK3 inhibition for 7 days",
"treatment_term_name": "GSK3 inhibition"
}
]
},
{
"@id": "/in-vitro-systems/IGVFSM9140ULKM/",
"accession": "IGVFSM9140ULKM",
"classifications": [
"differentiated cell specimen"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0009747/",
"status": "released",
"term_name": "GM25256 (WTC-11)"
}
],
"status": "released",
"summary": "GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 28 days, male, Homo sapiens treated with 4 μM GSK3 inhibition for 7 days",
"targeted_sample_term": {
"@id": "/sample-terms/CL_0000746/",
"status": "released",
"term_name": "cardiac muscle cell"
},
"taxa": "Homo sapiens",
"treatments": [
{
"@id": "/treatments/98ba0c5c-8005-41bc-bcbb-6c6eff41af4e/",
"purpose": "antagonist",
"status": "released",
"summary": "Treatment of 4 μM GSK3 inhibition for 7 days",
"treatment_term_name": "GSK3 inhibition"
}
]
}
],
"status": "released",
"summary": "RNA-seq: fold change over control, transcript quantifications"
},
"file_size": 565376,
"gene_list_for": [],
"href": "/tabular-files/IGVFFI9384YMLX/@@download/IGVFFI9384YMLX.tsv.gz",
"input_file_for": [
"/tabular-files/IGVFFI4480KZFW/"
],
"integrated_in": [],
"lab": {
"@id": "/labs/charles-gersbach/",
"title": "Charles Gersbach, Duke"
},
"loci_list_for": [],
"md5sum": "1442f1ab9d1a8a56e774bf7ec62b4e43",
"release_timestamp": "2024-12-10T00:24:34.466761+00:00",
"s3_uri": "s3://igvf-files/2024/10/24/c36d0f0f-7d1d-42ac-9d59-c1b0a39d3c7e/IGVFFI9384YMLX.tsv.gz",
"schema_version": "13",
"status": "released",
"submitted_by": {
"@id": "/users/3782ce69-0e9f-4b46-91f9-4578139785c7/",
"title": "Ruhi Rai"
},
"submitted_file_name": "/hpc/group/gersbachlab/tda17/IGVF_data_files/RNA/rnaseq_counts.tsv.gz",
"summary": "GRCh38 transcript quantifications",
"upload_status": "validated",
"uuid": "c36d0f0f-7d1d-42ac-9d59-c1b0a39d3c7e"
}