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IGVFFI9362JSBS

released
validated
File Set
IGVFDS4147RERW(single-cell ATAC-seq (SHARE-seq), single-cell RNA sequencing assay (SHARE-seq))
Summary
GRCm39 unfiltered fragments
Analysis Step Version
/analysis-step-versions/39c0498d-91f6-42de-8896-2fab1403f032/
File Format
bed
Content Type
fragments
Aliases
buenrostro-bernstein:IGVFDS4147RERW_fragments
md5sum
46121789e47b2b186cf55dfa7c8bb9b3
Content MD5sum
0274dc6d7fe1b948eaa76061935e6774
File Size
887 MB
Submitted File Name
gs://fc-9649faf8-a4ec-4ca4-a975-498a1707d03c/submissions/a6d4a8e2-651e-421f-ae34-bfdf4cf1f42e/single_cell_pipeline/67efe196-b6fa-4d32-adf0-323869bb96b7/call-atac/wf_atac/ab98e91d-a104-4f77-b7d9-4a764546d96e/call-generate_fragments/SS-PKR-131.fragments.tsv.gz
Checkfiles Version
v20
Attribution
Jason Buenrostro, Broad

Reference Source Details

Genome Assembly
GRCm39

File Format Specifications

1 item
Page
Description
Type
Download
Standardized File Format
Preview
Specification of fragment file generated by https://github.com/IGVF/single-cell-pipeline
file format specification

Samples

1 item
Accession
Type
Sample Terms
Summary
Tissue
Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 131)

Files This File Derives From

18 items
yaml
seqspec
Jason Buenrostro, Broad
1.2 KB
validated
yaml
seqspec
Jason Buenrostro, Broad
1.2 KB
validated
yaml
seqspec
Jason Buenrostro, Broad
1.2 KB
validated
yaml
seqspec
Jason Buenrostro, Broad
1.2 KB
validated
yaml
seqspec
Jason Buenrostro, Broad
1.2 KB
validated
yaml
seqspec
Jason Buenrostro, Broad
1.2 KB
validated
fastq
reads
Jason Buenrostro, Broad
1.1 GB
validated
fastq
reads
Jason Buenrostro, Broad
355 MB
validated
fastq
reads
Jason Buenrostro, Broad
203 MB
validated
fastq
reads
Jason Buenrostro, Broad
353 MB
validated

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tbi
index
index of IGVFFI9362JSBS
Jason Buenrostro, Broad
691 KB
validated