IGVFFI9314CWMG

released

validation exempted

File Set

IGVFDS4731QGJR(10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix)

Summary

GRCh38 peaks

Analysis Step Version

/analysis-step-versions/699d6738-4033-4afc-b6f3-1d82a80e0b41/

File Format

bed

Content Type

peaks

Aliases

ansuman-satpathy:igvf12_peaks_10x4

md5sum

d76acd9bdabb9804b50efa1aa3d95bb3

Content MD5sum

507ff3c2c7b1f4eb8fb89ab7bee257c5

File Size

1.3 MB

Submitted File Name

/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf12/e12l4_peaks.bed

Checkfiles Version

v14

Validation Error Detail

{"md5sum": "original md5sum 507ff3c2c7b1f4eb8fb89ab7bee257c5 does not match newly calculated md5sum d76acd9bdabb9804b50efa1aa3d95bb3.", "validate_files": "Error [file=/home/ubuntu/igvf-restricted-files/2025/01/28/2ce5ae45-3d99-433d-99c6-f1f3c044dd82/IGVFFI9314CWMG.bed.gz, line=151304]: chrom KI270728.1 not found [KI270728.1\t232281\t233178]\nAborting ... found error."}

Reference Source Details

Genome Assembly

GRCh38

File Format Specifications

1 item

Page

Description

Type

Download

Preview

10X Genomics Peaks Bedfile

file format specification

header_peak_set_scATAC_mEB_d21_mm39_20241120.tsv

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3762JDVU

MultiplexedSample

B cell, bone marrow

multiplexed sample: Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 6 days; Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 5 days; ... and 10 more samples