IGVFFI9270QNIN

released
validation exempted
File Set
IGVFDS7381NTBZ(single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq): cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix)
Summary
fragments
Analysis Step Version
File Format
tsv
Content Type
fragments
Aliases
ansuman-satpathy:igvf18_fragments_10x4
md5sum
6cd1147c5d32ee0b986e747fec44d804
Content MD5sum
a49f09c082dbcdb36eb1f0f58fe3d933
File Size
5.6 GB
Submitted File Name
/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf18/e18l4_fragments.tsv.gz
Checkfiles Version
Validation Error Detail
{"tabular_file_error": {"schema": null, "error_number_limit": 1000, "number_of_errors": 1000, "extra-cell": {"count": 1000, "description": "This row has more values compared to the header row (the first row in the data source). A key concept is that all the rows in tabular data must have the same number of columns.", "details": [{"row_number": 52, "field_number": 2, "note": ""}, {"row_number": 52, "field_number": 3, "note": ""}]}, "error_types": ["extra-cell"]}}
Attribution

File Format Specifications

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (female) IMR-90 cell line; Homo sapiens (female) MCF-7 cell line; ... and 17 more samples

Files Derived From This File

2 items
bed
peaks
GRCh38 peaks
Ansuman Satpathy, Stanford
1.4 MB
validation exempted
tbi
index
index of IGVFFI9270QNIN
Ansuman Satpathy, Stanford
1.8 MB
validated