IGVFFI9254IQXZ

released

validation exempted

File Set

IGVFDS2018URDY(10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix)

Summary

fragments

Analysis Step Version

/analysis-step-versions/4e4a3f0b-c3bc-477c-bc53-c3091bc56756/

File Format

tsv

Content Type

fragments

Aliases

ansuman-satpathy:igvf10_fragments_10x2

md5sum

2f8b867830dcf7eb020d0be82d029441

Content MD5sum

8e583326d6e2e74a6ef786314b8dfb9e

File Size

8.8 GB

Submitted File Name

/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf10/e10l2_fragments.tsv.gz

Checkfiles Version

v14

Validation Error Detail

{"tabular_file_error": {"schema": null, "error_number_limit": 1000, "number_of_errors": 1000, "extra-cell": {"count": 1000, "description": "This row has more values compared to the header row (the first row in the data source). A key concept is that all the rows in tabular data must have the same number of columns.", "details": [{"row_number": 52, "field_number": 2, "note": ""}, {"row_number": 52, "field_number": 3, "note": ""}]}, "error_types": ["extra-cell"]}}

File Format Specifications

1 item

Page

Description

Type

Download

Preview

10X Genomics Fragment File

file format specification

header_fragment_files_from_10x_genomics_20241120.tsv

Samples

2 items

Sample Terms

Disease Terms

Summary

IGVFSM0539NUPM

MultiplexedSample

Jurkat, K562, TeloHAEC, THP-1

multiplexed sample: Jurkat cell line, male, Homo sapiens treated with 100 ng/mL phorbol 13-acetate 12-myristate for 4 hours, 5 μg/mL T-cell surface glycoprotein CD3 gamma chain for 4 hours; K562 cell line, female, Homo sapiens modified with CRISPRi Sp-dCas9-KOX1-KRAB; ... and 8 more samples

IGVFSM4547BFMA

MultiplexedSample

Jurkat, K562, TeloHAEC, THP-1