IGVFFI9240JENT

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/tabular-files/IGVFFI9240JENT/",
4    "@type": [
5        "TabularFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI9240JENT",
10    "aliases": [
11        "charles-gersbach:cd8-tcell-ko-znf217-grnas-metadata"
12    ],
13    "assay_titles": [],
14    "assembly": "GRCh38",
15    "audit": {
16        "INTERNAL_ACTION": [
17            {
18                "category": "mismatched status",
19                "detail": "Released tabular file [IGVFFI9240JENT](/tabular-files/IGVFFI9240JENT/) has in progress subobject curated set [IGVFDS4080QWLS](/curated-sets/IGVFDS4080QWLS/).",
20                "level": 30,
21                "level_name": "INTERNAL_ACTION",
22                "name": "audit_item_status",
23                "path": "/tabular-files/IGVFFI9240JENT/"
24            }
25        ],
26        "NOT_COMPLIANT": [
27            {
28                "category": "missing file format specifications",
29                "detail": "Tabular file [IGVFFI9240JENT](/tabular-files/IGVFFI9240JENT/) has no `file_format_specifications`. Tabular files, with the exception of vcf files, are expected to link to a file format specifications document describing the headers of the file.",
30                "level": 50,
31                "level_name": "NOT_COMPLIANT",
32                "name": "audit_file_no_file_format_specifications",
33                "path": "/tabular-files/IGVFFI9240JENT/"
34            }
35        ]
36    },
37    "award": {
38        "@id": "/awards/HG012053/",
39        "component": "functional characterization"
40    },
41    "barcode_map_for": [],
42    "checkfiles_version": "v14",
43    "content_md5sum": "7547c848259fd66bd6171eae9c2c4eb6",
44    "content_type": "guide RNA sequences",
45    "controlled_access": false,
46    "creation_timestamp": "2024-06-18T19:40:43.708284+00:00",
47    "file_format": "tsv",
48    "file_set": {
49        "@id": "/curated-sets/IGVFDS4080QWLS/",
50        "@type": [
51            "CuratedSet",
52            "FileSet",
53            "Item"
54        ],
55        "accession": "IGVFDS4080QWLS",
56        "file_set_type": "guide RNAs",
57        "status": "in progress",
58        "summary": "Homo sapiens GRCh38 guide RNAs",
59        "taxa": "Homo sapiens"
60    },
61    "file_size": 213,
62    "gene_list_for": [],
63    "href": "/tabular-files/IGVFFI9240JENT/@@download/IGVFFI9240JENT.tsv.gz",
64    "input_file_for": [],
65    "integrated_in": [
66        {
67            "@id": "/construct-library-sets/IGVFDS7189YPQQ/",
68            "file_set_type": "guide library",
69            "small_scale_gene_list": [
70                {
71                    "@id": "/genes/ENSG00000171940/",
72                    "status": "released",
73                    "symbol": "ZNF217"
74                }
75            ],
76            "status": "released",
77            "summary": "guide (sgRNA) library targeting transcription start sites in ZNF217"
78        }
79    ],
80    "lab": {
81        "@id": "/labs/charles-gersbach/",
82        "title": "Charles Gersbach, Duke"
83    },
84    "loci_list_for": [],
85    "md5sum": "9647902b53953c6cc45d100e1cf20f4b",
86    "quality_metrics": [],
87    "release_timestamp": "2025-02-05T21:27:56.220355+00:00",
88    "s3_uri": "s3://igvf-files/2024/06/18/c46c9289-692e-42db-9793-6671891d2291/IGVFFI9240JENT.tsv.gz",
89    "schema_version": "15",
90    "status": "released",
91    "submitted_by": {
92        "@id": "/users/29f5f78d-ac90-421e-90c6-a90e1dc407a7/",
93        "title": "Alejandro Barrera"
94    },
95    "submitted_file_name": "/data/reddylab/Alex/IGVF/data_submissions/reference_data/AIM_2_T_cell_project_1/cas9_ko.ZNF217.igvf_metadata.v3.txt.gz",
96    "summary": "GRCh38 guide RNA sequences",
97    "upload_status": "validated",
98    "uuid": "c46c9289-692e-42db-9793-6671891d2291"
99}