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IGVFFI9112WEDK

released
validation exempted
File Set
IGVFDS3457PPSX(10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix)
Summary
GRCh38 peaks
Analysis Step Version
/analysis-step-versions/699d6738-4033-4afc-b6f3-1d82a80e0b41/
File Format
bed
Content Type
peaks
Aliases
ansuman-satpathy:igvf17_peaks_10x3
md5sum
8d0dd5e4f2e876a3a1ea4d1505c4d4fc
Content MD5sum
56d4a6cec8123c5492b71a0c8012b87b
File Size
3.2 MB
Submitted File Name
/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf17/e17l3_peaks.bed
Checkfiles Version
v14
Validation Error Detail
{"md5sum": "original md5sum 56d4a6cec8123c5492b71a0c8012b87b does not match newly calculated md5sum 8d0dd5e4f2e876a3a1ea4d1505c4d4fc.", "validate_files": "Error [file=/home/ubuntu/igvf-files/2025/01/28/c6ee4504-97a9-48cf-bd5d-c2882b756e34/IGVFFI9112WEDK.bed.gz, line=390147]: chrom KI270727.1 not found [KI270727.1\t52069\t52944]\nAborting ... found error."}
Attribution
Ansuman Satpathy, Stanford

Reference Source Details

Genome Assembly
GRCh38

File Format Specifications

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (female) RUES2 differentiated cell specimen induced to gastrula for 2 days; Homo sapiens (female) RUES2 differentiated cell specimen induced to gastrula for 1 day; ... and 10 more samples

Files This File Derives From

1 item
Accession
File Set
File Format
Content Type
Lab
File Size
Upload Status
tsv
fragments
Ansuman Satpathy, Stanford
5.1 GB
validation exempted