IGVFFI9112WEDK

released

validation exempted

File Set

IGVFDS0398ALPE(10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix)

Summary

GRCh38 peaks

Analysis Step Version

/analysis-step-versions/699d6738-4033-4afc-b6f3-1d82a80e0b41/

File Format

bed

Content Type

peaks

Aliases

ansuman-satpathy:igvf17_peaks_10x3

md5sum

8d0dd5e4f2e876a3a1ea4d1505c4d4fc

Content MD5sum

56d4a6cec8123c5492b71a0c8012b87b

File Size

3.2 MB

Submitted File Name

/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf17/e17l3_peaks.bed

Checkfiles Version

v14

Validation Error Detail

{"md5sum": "original md5sum 56d4a6cec8123c5492b71a0c8012b87b does not match newly calculated md5sum 8d0dd5e4f2e876a3a1ea4d1505c4d4fc.", "validate_files": "Error [file=/home/ubuntu/igvf-files/2025/01/28/c6ee4504-97a9-48cf-bd5d-c2882b756e34/IGVFFI9112WEDK.bed.gz, line=390147]: chrom KI270727.1 not found [KI270727.1\t52069\t52944]\nAborting ... found error."}

Reference Source Details

Genome Assembly

GRCh38

File Format Specifications

1 item

Page

Description

Type

Download

Preview

10X Genomics Peaks Bedfile

file format specification

header_peak_set_scATAC_mEB_d21_mm39_20241120.tsv

Samples

5 items

Sample Terms

Disease Terms

Summary

IGVFSM0198VBOA

MultiplexedSample

RUES2

multiplexed sample: RUES2 differentiated cell specimen induced to gastrula for 2 days, female, Homo sapiens; RUES2 differentiated cell specimen induced to gastrula for 1 day, female, Homo sapiens; ... and 10 more samples

MultiplexedSample

MultiplexedSample

MultiplexedSample

MultiplexedSample