IGVFFI9091HPCI

released
validation exempted
File Set
IGVFDS9825AFPQ(10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix)
Summary
fragments
Analysis Step Version
File Format
tsv
Content Type
fragments
Aliases
ansuman-satpathy:igvf16_fragments_10x3
md5sum
fef99bae08c022a5e28381bbb738ec79
Content MD5sum
38ef2cd64aa35d13fab1ffc002037f62
File Size
5.8 GB
Submitted File Name
/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf16/e16l3_fragments.tsv.gz
Checkfiles Version
Validation Error Detail
{"tabular_file_error": {"schema": null, "error_number_limit": 1000, "number_of_errors": 1000, "extra-cell": {"count": 1000, "description": "This row has more values compared to the header row (the first row in the data source). A key concept is that all the rows in tabular data must have the same number of columns.", "details": [{"row_number": 52, "field_number": 2, "note": ""}, {"row_number": 52, "field_number": 3, "note": ""}]}, "error_types": ["extra-cell"]}}

File Format Specifications

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (mixed sex) induced pluripotent stem differentiated cell specimen induced to islet of Langerhans for 11 days; Homo sapiens (mixed sex) induced pluripotent stem differentiated cell specimen induced to islet of Langerhans for 3 days; ... and 6 more samples

Files This File Derives From

16 items
fastq
reads
Ansuman Satpathy, Stanford
7.8 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
4.4 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
4.5 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
8.0 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
7.8 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
1.7 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
7.9 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
1.8 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
1.8 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
1.8 GB
validated

Files Derived From This File

2 items
bed
peaks
GRCh38 peaks
Ansuman Satpathy, Stanford
2.9 MB
validation exempted
tbi
index
index of IGVFFI9091HPCI
Ansuman Satpathy, Stanford
1.8 MB
validated

Attribution