IGVFFI8904VCYX

released
validated
{
    "@context": "/terms/",
    "@id": "/tabular-files/IGVFFI8904VCYX/",
    "@type": [
        "TabularFile",
        "File",
        "Item"
    ],
    "accession": "IGVFFI8904VCYX",
    "aliases": [
        "jay-shendure:tabularfile_CREs_LaLanne"
    ],
    "assay_titles": [],
    "audit": {
        "NOT_COMPLIANT": [
            {
                "category": "missing file format specifications",
                "detail": "Tabular file [IGVFFI8904VCYX](/tabular-files/IGVFFI8904VCYX/) has no `file_format_specifications`. Tabular files are expected to link to a file format specifications document describing the headers of the file.",
                "level": 50,
                "level_name": "NOT_COMPLIANT",
                "name": "audit_tabular_file_no_file_format_specifications",
                "path": "/tabular-files/IGVFFI8904VCYX/"
            }
        ]
    },
    "award": {
        "@id": "/awards/HG011966/",
        "component": "functional characterization"
    },
    "barcode_map_for": [],
    "content_md5sum": "cc712ec7159f5015d6e82cdac216d44b",
    "content_type": "MPRA sequence designs",
    "controlled_access": false,
    "creation_timestamp": "2024-05-07T19:01:53.307935+00:00",
    "file_format": "tsv",
    "file_set": {
        "@id": "/curated-sets/IGVFDS0238EDXB/",
        "accession": "IGVFDS0238EDXB",
        "file_set_type": "elements",
        "summary": "Mus musculus elements",
        "taxa": "Mus musculus"
    },
    "file_size": 59643,
    "gene_list_for": [],
    "href": "/tabular-files/IGVFFI8904VCYX/@@download/IGVFFI8904VCYX.tsv.gz",
    "input_file_for": [
        "/tabular-files/IGVFFI2410QRVN/",
        "/tabular-files/IGVFFI0292XWJM/"
    ],
    "integrated_in": [
        {
            "@id": "/construct-library-sets/IGVFDS7655GRFI/",
            "file_set_type": "reporter library",
            "summary": "Reporter library targeting accessible genome regions in many genomic loci"
        }
    ],
    "lab": {
        "@id": "/labs/jay-shendure/",
        "title": "Jay Shendure, UW"
    },
    "loci_list_for": [
        "/construct-library-sets/IGVFDS7655GRFI/"
    ],
    "md5sum": "b5cab2088efa75ff054a82d06abd650c",
    "release_timestamp": "2024-06-27T00:41:13.766266+00:00",
    "s3_uri": "s3://igvf-files/2024/05/07/0c6edde4-8cb0-4fe6-9c8c-76c4a613967f/IGVFFI8904VCYX.txt.gz",
    "schema_version": "13",
    "status": "released",
    "submitted_by": {
        "@id": "/users/73f58e9f-8f5d-4fee-a7cd-dd63c0167e4b/",
        "title": "Beth Martin"
    },
    "submitted_file_name": "/net/shendure/vol1/home/martin91/IGVF/forupload/JBL-CRE-sequences-coordinates.txt.gz",
    "summary": "MPRA sequence designs",
    "upload_status": "validated",
    "uuid": "0c6edde4-8cb0-4fe6-9c8c-76c4a613967f"
}