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IGVFFI8784WSUQ

released
validated
File Set
IGVFDS6245HBJO(STARR-seq integrating a reporter library targeting random selections genome-wide pooled from 1000 Genomes donors: NA19096, NA19116, NA19130, NA19159, NA19197)
Summary
GRCh38 reporter genomic variant effects
Analysis Step Version
/analysis-step-versions/122238ae-e8eb-4836-95a7-299926412e1d/
File Format
tsv
Content Type
reporter genomic variant effects
Aliases
tim-reddy:starr-seq-bird-output-file-P010
md5sum
f0fd2e6cca3450e1f9e668bd479570d3
Content MD5sum
05445509a138f0fef97f4a8fdc7fb331
File Size
72 MB
Submitted File Name
/data/reddylab/Alex/IGVF/data_submissions/processed_data/AIM_1_STARR_seq/K562.starrseq.bird_output.spdi.pool10.txt.gz
Checkfiles Version
v14
Attribution
Bill Majoros, Duke

Reference Source Details

Genome Assembly
GRCh38

File Format Specifications

1 item
Page
Description
Type
Download
Standardized File Format
Preview
BIRD output file format as described in http://www.geneprediction.org/bird
file format specification

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
Homo sapiens (female) K562 cell line transfected with a reporter library

Files This File Derives From

1 item
Accession
File Set
File Format
Content Type
Lab
File Size
Upload Status
tsv
reporter variants
Bill Majoros, Duke
30 MB
validation exempted

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tsv
reporter genomic variant effects
GRCh38 reporter genomic variant effects
Bill Majoros, Duke
156 MB
validated