IGVFFI8753JHNH

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2266YDVM(CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci)

Summary

GRCh38 GENCODE 32 unfiltered local differential expression

Analysis Step Version

/analysis-step-versions/4cfc022a-ff63-4d13-99f7-257a6bfe4bd7/

File Format

csv

Content Type

unfiltered local differential expression

Aliases

gary-hon:H9_CM_Pilot2_Mini_PB9_PrimaryAnalysis_DE_local

md5sum

a19b65f2011b45b4d15bbc54de2b6a70

Content MD5sum

ec669994dcce7b4d872c61f05b6eea21

File Size

6.8 KB

Submitted File Name

/project/GCRB/Hon_lab/s215194/IGVF/data_submission/reference_files/H9_CM_Pilot2_Mini_PB9_PrimaryAnalysis_DE_local.csv.gz

Checkfiles Version

v16

Attribution

Gary Hon, UT

(

HG011996 — Gary Hon

)

Reference Source Details

Genome Assembly

GRCh38

Transcriptome Annotation

GENCODE 32

File Format Specifications

1 item

Page

Description

Type

Download

Standardized File Format

Preview

pySpade Differential Expression table definitions

file format specification

pySpade_DE_table_definitions.pdf

Samples

4 items

Sample Terms

Summary

IGVFSM1513DHGW

InVitroSystem

Homo sapiens (female) H9 differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW433) modified with CRISPRi Sp-dCas9, 3 week(s) after transfection with a guide library

IGVFSM3839SOTK

InVitroSystem

Homo sapiens (female) H9 differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW432) modified with CRISPRi Sp-dCas9, 3 week(s) after transfection with a guide library

IGVFSM5829AVCL

InVitroSystem

Homo sapiens (female) H9 differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW431) modified with CRISPRi Sp-dCas9, 3 week(s) after transfection with a guide library

IGVFSM8133YEXK

InVitroSystem

Homo sapiens (female) H9 differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW434) modified with CRISPRi Sp-dCas9, 3 week(s) after transfection with a guide library