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IGVFFI8753JHNH

preview
validated
This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS2266YDVM(interference Perturb-seq: filtered feature barcode matrix, raw feature barcode matrix, sparse gene count matrix, unfiltered global differential expression, unfiltered local differential expression)
Summary
unfiltered local differential expression
Analysis Step Version
/analysis-step-versions/4cfc022a-ff63-4d13-99f7-257a6bfe4bd7/
File Format
csv
Content Type
unfiltered local differential expression
Aliases
gary-hon:H9_CM_Pilot2_Mini_PB9_PrimaryAnalysis_DE_local
md5sum
a19b65f2011b45b4d15bbc54de2b6a70
Content MD5sum
ec669994dcce7b4d872c61f05b6eea21
File Size
6.8 KB
Submitted File Name
/project/GCRB/Hon_lab/s215194/IGVF/data_submission/reference_files/H9_CM_Pilot2_Mini_PB9_PrimaryAnalysis_DE_local.csv.gz
Checkfiles Version
v16
Attribution
Gary Hon, UT

File Format Specifications

1 item
Page
Description
Type
Download
Preview
pySpade Differential Expression table definitions
file format specification

Samples

4 items
Sample Terms
Summary
InVitroSystem
Homo sapiens (female) H9 differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW433) modified with CRISPRi Sp-dCas9, 3 week(s) after transfection with a guide library
InVitroSystem
Homo sapiens (female) H9 differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW432) modified with CRISPRi Sp-dCas9, 3 week(s) after transfection with a guide library
InVitroSystem
Homo sapiens (female) H9 differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW431) modified with CRISPRi Sp-dCas9, 3 week(s) after transfection with a guide library
InVitroSystem
Homo sapiens (female) H9 differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW434) modified with CRISPRi Sp-dCas9, 3 week(s) after transfection with a guide library

Files This File Derives From

2 items
hdf5
filtered feature barcode matrix
Gary Hon, UT
667 MB
validated
pkl
raw feature barcode matrix
Gary Hon, UT
2.2 GB
validated