{
"@context": "/terms/",
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"File",
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],
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"aliases": [
"jesse-engreitz:auxiliary_sortparams_file_CRUDO_SSFA2-Auxin6hrs-FF2"
],
"assay_titles": [
"CRISPR FlowFISH screen"
],
"audit": {
"NOT_COMPLIANT": [
{
"category": "missing file format specifications",
"detail": "Tabular file [IGVFFI8693AQQE](/tabular-files/IGVFFI8693AQQE/) has no `file_format_specifications`. Tabular files are expected to link to a file format specifications document describing the headers of the file.",
"level": 50,
"level_name": "NOT_COMPLIANT",
"name": "audit_tabular_file_no_file_format_specifications",
"path": "/tabular-files/IGVFFI8693AQQE/"
}
]
},
"award": {
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"component": "functional characterization"
},
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"content_md5sum": "6965b813f12b5244d018e78c6923ee66",
"content_type": "sample sort parameters",
"controlled_access": false,
"creation_timestamp": "2024-07-03T00:36:07.963216+00:00",
"file_format": "tsv",
"file_set": {
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"accession": "IGVFDS3809LQRK",
"file_set_type": "cell sorting",
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{
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"classifications": [
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],
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"term_name": "HCT116"
}
],
"summary": "HCT116 cell line, male, Homo sapiens (sorting details: FACS bin A for 0-10% expression of SSFA2) treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours, modified with a guide library",
"taxa": "Homo sapiens"
},
{
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"term_name": "HCT116"
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],
"summary": "HCT116 cell line, male, Homo sapiens (sorting details: FACS bin B for 10-20% expression of SSFA2) treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours, modified with a guide library",
"taxa": "Homo sapiens"
},
{
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"term_name": "HCT116"
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],
"summary": "HCT116 cell line, male, Homo sapiens (sorting details: FACS bin C for 35-45% expression of SSFA2) treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours, modified with a guide library",
"taxa": "Homo sapiens"
},
{
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],
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"taxa": "Homo sapiens"
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],
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],
"summary": "HCT116 cell line, male, Homo sapiens (sorting details: FACS bin E for 80-90% expression of SSFA2) treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours, modified with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM8591NYNI/",
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],
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"term_name": "HCT116"
}
],
"summary": "HCT116 cell line, male, Homo sapiens (sorting details: FACS bin F for 80-100% expression of SSFA2) treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours, modified with a guide library",
"taxa": "Homo sapiens"
}
],
"summary": "cell sorting for mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci, mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci, ... and 4 more measurement sets"
},
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"integrated_in": [],
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"title": "Jesse Engreitz, Stanford"
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"release_timestamp": "2024-07-10T20:30:09.171869+00:00",
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"schema_version": "11",
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"title": "Benjamin Doughty"
},
"submitted_file_name": "/oak/stanford/groups/engreitz/Projects/Cohesin/240410_IGVF_upload/sortparams2/220307B014_15.ssfa2.tsv.gz",
"summary": "sample sort parameters",
"upload_status": "validated",
"uuid": "6b9347d8-e7c6-4119-80e4-0643de2fd508"
}