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IGVFFI8674KIMY

released
validated
File Set
IGVFDS4582MPNU(RNA-seq: fold change over control, transcript quantifications)
Summary
GRCh38 transcript quantifications
Analysis Step Version
/analysis-step-versions/f53cadd0-3e88-4b35-ab64-8e1683998686/
File Format
tsv
Content Type
transcript quantifications
Aliases
charles-gersbach:cd8-tcells-counts-rna-seq-batf3-overexpression
md5sum
f3f6759d9ca0a5c0cd62b59c9c2edb33
Content MD5sum
ca3cb3de1790dcb5887ddd541bd72370
File Size
505 KB
Submitted File Name
/data/reddylab/Alex/IGVF/data_submissions/processed_data/AIM_2_T_cell_project_1/cd8.rnaseq.batf3_overexpression.star2.featurecounts.counts.txt.gz

Reference Source Details

Genome Assembly
GRCh38

File Format Specifications

Samples

6 items
Sample Terms
Summary
PrimaryCell
CD8-positive, alpha-beta memory T cell, Homo sapiens transduced (lentivirus) with a expression vector library
PrimaryCell
CD8-positive, alpha-beta memory T cell, Homo sapiens transduced (lentivirus) with a expression vector library
PrimaryCell
CD8-positive, alpha-beta memory T cell, Homo sapiens transduced (lentivirus) with a expression vector library
PrimaryCell
CD8-positive, alpha-beta memory T cell, Homo sapiens transduced (lentivirus) with a expression vector library
PrimaryCell
CD8-positive, alpha-beta memory T cell, Homo sapiens transduced (lentivirus) with a expression vector library
PrimaryCell
CD8-positive, alpha-beta memory T cell, Homo sapiens transduced (lentivirus) with a expression vector library

Files This File Derives From

6 items
bam
transcriptome alignments
Charles Gersbach, Duke
1.3 GB
validated
bam
transcriptome alignments
Charles Gersbach, Duke
1.6 GB
validated
bam
transcriptome alignments
Charles Gersbach, Duke
1.6 GB
validated
bam
transcriptome alignments
Charles Gersbach, Duke
1.2 GB
validated
bam
transcriptome alignments
Charles Gersbach, Duke
1.5 GB
validated
bam
transcriptome alignments
Charles Gersbach, Duke
1.4 GB
validated

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tsv
fold change over control
GRCh38 fold change over control
Charles Gersbach, Duke
1.2 MB
validated

Attribution

Award
HG012053
Principal Investigator(s)
Contact P.I.
Charles Gersbach
Lab
Charles Gersbach, Duke