IGVFFI8609YULC

released
validation exempted
File Set
IGVFDS6039JXBR(10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix)
Summary
fragments
Analysis Step Version
File Format
tsv
Content Type
fragments
Aliases
ansuman-satpathy:igvf15_fragments_10x2
md5sum
77eaf147d6714bd9c0818d69cc894381
Content MD5sum
83d859369ff132ab7d68b3b33e615be0
File Size
4.4 GB
Submitted File Name
/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf15/e15l2_fragments.tsv.gz
Checkfiles Version
Validation Error Detail
{"tabular_file_error": {"schema": null, "error_number_limit": 1000, "number_of_errors": 1000, "extra-cell": {"count": 1000, "description": "This row has more values compared to the header row (the first row in the data source). A key concept is that all the rows in tabular data must have the same number of columns.", "details": [{"row_number": 52, "field_number": 2, "note": ""}, {"row_number": 52, "field_number": 3, "note": ""}]}, "error_types": ["extra-cell"]}}

File Format Specifications

Samples

3 items
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: GM25256 (WTC-11) differentiated cell specimen induced to liver for 18 days, male, Homo sapiens; GM25256 (WTC-11) differentiated cell specimen induced to liver for 13 days, male, Homo sapiens; ... and 10 more samples
MultiplexedSample
multiplexed sample: GM25256 (WTC-11) differentiated cell specimen induced to liver for 18 days, male, Homo sapiens; GM25256 (WTC-11) differentiated cell specimen induced to liver for 13 days, male, Homo sapiens; ... and 10 more samples
MultiplexedSample
multiplexed sample: GM25256 (WTC-11) differentiated cell specimen induced to liver for 18 days, male, Homo sapiens; GM25256 (WTC-11) differentiated cell specimen induced to liver for 13 days, male, Homo sapiens; ... and 10 more samples

Files This File Derives From

8 items
fastq
reads
Ansuman Satpathy, Stanford
11 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
11 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
11 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
2.5 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
2.4 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
6.1 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
5.9 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
11 GB
validated

Files Derived From This File

2 items
tbi
index
index of IGVFFI8609YULC
Ansuman Satpathy, Stanford
1.6 MB
validated
bed
peaks
GRCh38 peaks
Ansuman Satpathy, Stanford
2.6 MB
validation exempted

Attribution