{
"@context": "/terms/",
"@id": "/tabular-files/IGVFFI8343LJPE/",
"@type": [
"TabularFile",
"File",
"Item"
],
"accession": "IGVFFI8343LJPE",
"aliases": [
"ansuman-satpathy:barcode_sample_map_igvf18"
],
"assay_titles": [],
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released tabular file [IGVFFI8343LJPE](/tabular-files/IGVFFI8343LJPE/) has in progress subobject curated set [IGVFDS8716EOGA](/curated-sets/IGVFDS8716EOGA/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/tabular-files/IGVFFI8343LJPE/"
}
]
},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"barcode_map_for": [
"/multiplexed-samples/IGVFSM4392KEFB/",
"/multiplexed-samples/IGVFSM9642EHZY/",
"/multiplexed-samples/IGVFSM5815WALV/",
"/multiplexed-samples/IGVFSM3125MLLP/"
],
"checkfiles_version": "v17",
"content_md5sum": "1569e3aa17f21057204f7d8be8d33465",
"content_type": "barcode to sample mapping",
"controlled_access": false,
"creation_timestamp": "2025-01-27T22:54:30.443202+00:00",
"file_format": "tsv",
"file_format_specifications": [
"/documents/71a236e8-9517-408b-8793-95cac2c8833b/"
],
"file_set": {
"@id": "/curated-sets/IGVFDS8716EOGA/",
"accession": "IGVFDS8716EOGA",
"file_set_type": "barcodes",
"samples": [
{
"@id": "/in-vitro-systems/IGVFSM9558DHKX/",
"accession": "IGVFSM9558DHKX",
"classifications": [
"cell line"
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "TeloHAEC cell line, female, Homo sapiens",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM7764FVUA/",
"accession": "IGVFSM7764FVUA",
"classifications": [
"cell line"
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "TeloHAEC cell line, female, Homo sapiens",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM1534MDDV/",
"accession": "IGVFSM1534MDDV",
"classifications": [
"cell line"
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "TeloHAEC cell line, female, Homo sapiens treated with 3 μM Yoda1 for 4 hours",
"taxa": "Homo sapiens",
"treatments": [
{
"@id": "/treatments/ff03c6ff-c1f5-4b47-bd9d-62f22d5794c5/",
"purpose": "perturbation",
"status": "in progress",
"summary": "Treatment of 3 μM Yoda1 for 4 hours",
"treatment_term_name": "Yoda1"
}
]
},
{
"@id": "/in-vitro-systems/IGVFSM6432BZOX/",
"accession": "IGVFSM6432BZOX",
"classifications": [
"cell line"
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "TeloHAEC cell line, female, Homo sapiens treated with 3 μM Yoda1 for 4 hours",
"taxa": "Homo sapiens",
"treatments": [
{
"@id": "/treatments/ff03c6ff-c1f5-4b47-bd9d-62f22d5794c5/",
"purpose": "perturbation",
"status": "in progress",
"summary": "Treatment of 3 μM Yoda1 for 4 hours",
"treatment_term_name": "Yoda1"
}
]
},
{
"@id": "/in-vitro-systems/IGVFSM1771MKNB/",
"accession": "IGVFSM1771MKNB",
"classifications": [
"differentiated cell specimen"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0022838/",
"status": "released",
"term_name": "HUDEP-2"
}
],
"status": "released",
"summary": "HUDEP-2 differentiated cell specimen induced to erythrocyte for 14 days, Homo sapiens",
"targeted_sample_term": {
"@id": "/sample-terms/CL_0000232/",
"status": "released",
"term_name": "erythrocyte"
},
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM8737UEZA/",
"accession": "IGVFSM8737UEZA",
"classifications": [
"differentiated cell specimen"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0022838/",
"status": "released",
"term_name": "HUDEP-2"
}
],
"status": "released",
"summary": "HUDEP-2 differentiated cell specimen induced to erythrocyte for 14 days, Homo sapiens",
"targeted_sample_term": {
"@id": "/sample-terms/CL_0000232/",
"status": "released",
"term_name": "erythrocyte"
},
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM8332LYQZ/",
"accession": "IGVFSM8332LYQZ",
"classifications": [
"differentiated cell specimen"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0022838/",
"status": "released",
"term_name": "HUDEP-2"
}
],
"status": "released",
"summary": "HUDEP-2 differentiated cell specimen induced to erythrocyte for 7 days, Homo sapiens",
"targeted_sample_term": {
"@id": "/sample-terms/CL_0000232/",
"status": "released",
"term_name": "erythrocyte"
},
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM3772AARV/",
"accession": "IGVFSM3772AARV",
"classifications": [
"differentiated cell specimen"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0022838/",
"status": "released",
"term_name": "HUDEP-2"
}
],
"status": "released",
"summary": "HUDEP-2 differentiated cell specimen induced to erythrocyte for 7 days, Homo sapiens",
"targeted_sample_term": {
"@id": "/sample-terms/CL_0000232/",
"status": "released",
"term_name": "erythrocyte"
},
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM9969CPTK/",
"accession": "IGVFSM9969CPTK",
"classifications": [
"cell line"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0002824/",
"status": "released",
"term_name": "HCT116"
}
],
"status": "released",
"summary": "HCT116 cell line, male, Homo sapiens",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM1839FCFT/",
"accession": "IGVFSM1839FCFT",
"classifications": [
"cell line"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0002824/",
"status": "released",
"term_name": "HCT116"
}
],
"status": "released",
"summary": "HCT116 cell line, male, Homo sapiens",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM6920AEIX/",
"accession": "IGVFSM6920AEIX",
"classifications": [
"cell line"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0002824/",
"status": "released",
"term_name": "HCT116"
}
],
"status": "released",
"summary": "HCT116 cell line, male, Homo sapiens",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM8404EKXH/",
"accession": "IGVFSM8404EKXH",
"classifications": [
"cell line"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001203/",
"status": "released",
"term_name": "MCF-7"
}
],
"status": "released",
"summary": "MCF-7 cell line, female, Homo sapiens",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM7026LUVK/",
"accession": "IGVFSM7026LUVK",
"classifications": [
"cell line"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001203/",
"status": "released",
"term_name": "MCF-7"
}
],
"status": "released",
"summary": "MCF-7 cell line, female, Homo sapiens",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM1269ANTZ/",
"accession": "IGVFSM1269ANTZ",
"classifications": [
"cell line"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001203/",
"status": "released",
"term_name": "MCF-7"
}
],
"status": "released",
"summary": "MCF-7 cell line, female, Homo sapiens",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM5808PBXT/",
"accession": "IGVFSM5808PBXT",
"classifications": [
"cell line"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0003072/",
"status": "released",
"term_name": "SK-N-SH"
}
],
"status": "released",
"summary": "SK-N-SH cell line, female, Homo sapiens",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM3799BTFA/",
"accession": "IGVFSM3799BTFA",
"classifications": [
"cell line"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0003072/",
"status": "released",
"term_name": "SK-N-SH"
}
],
"status": "released",
"summary": "SK-N-SH cell line, female, Homo sapiens",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM0805XOHS/",
"accession": "IGVFSM0805XOHS",
"classifications": [
"cell line"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001196/",
"status": "released",
"term_name": "IMR-90"
}
],
"status": "released",
"summary": "IMR-90 cell line, female, Homo sapiens",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM7300ABNM/",
"accession": "IGVFSM7300ABNM",
"classifications": [
"cell line"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001196/",
"status": "released",
"term_name": "IMR-90"
}
],
"status": "released",
"summary": "IMR-90 cell line, female, Homo sapiens",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM9180DDOA/",
"accession": "IGVFSM9180DDOA",
"classifications": [
"cell line"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001196/",
"status": "released",
"term_name": "IMR-90"
}
],
"status": "released",
"summary": "IMR-90 cell line, female, Homo sapiens",
"taxa": "Homo sapiens"
}
],
"status": "in progress",
"summary": "barcodes"
},
"file_size": 396,
"gene_list_for": [],
"href": "/tabular-files/IGVFFI8343LJPE/@@download/IGVFFI8343LJPE.tsv.gz",
"input_file_for": [],
"integrated_in": [],
"lab": {
"@id": "/labs/ansuman-satpathy/",
"title": "Ansuman Satpathy, Stanford"
},
"loci_list_for": [],
"md5sum": "033ce2644f2d2d7c7e052e0efd499796",
"quality_metrics": [],
"release_timestamp": "2025-03-11T22:55:51.067294+00:00",
"s3_uri": "s3://igvf-files/2025/01/27/453b6817-f7d6-43b6-b700-10af976a5ee1/IGVFFI8343LJPE.tsv.gz",
"schema_version": "13",
"status": "released",
"submitted_by": {
"@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
"title": "Christopher Mcginnis"
},
"submitted_file_name": "/home/users/cmcginni/igvf_utils_out/bcmaps/barcode_map_igvf18.tsv.gz",
"summary": "barcode to sample mapping",
"upload_status": "validated",
"uuid": "453b6817-f7d6-43b6-b700-10af976a5ee1"
}