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IGVFFI8318PQLH

released
validation exempted
File Set
IGVFDS2018URDY(single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq))
Summary
GRCh38 peaks
Analysis Step Version
/analysis-step-versions/699d6738-4033-4afc-b6f3-1d82a80e0b41/
File Format
bed
Content Type
peaks
Aliases
ansuman-satpathy:igvf10_peaks_10x1
md5sum
2979cc6717aa4bae4098efa856b23ea8
Content MD5sum
b5e256e98ebd15e05c6ab98ffc74ebe0
File Size
1.6 MB
Submitted File Name
/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf10/e10l1_peaks.bed
Checkfiles Version
v14
Validation Error Detail
{"md5sum": "original md5sum b5e256e98ebd15e05c6ab98ffc74ebe0 does not match newly calculated md5sum 2979cc6717aa4bae4098efa856b23ea8.", "validate_files": "Error [file=/home/ubuntu/igvf-files/2025/01/28/d0d796bb-9bd7-4712-a2b8-ae957fb74b44/IGVFFI8318PQLH.bed.gz, line=191173]: chrom KI270728.1 not found [KI270728.1\t232268\t233165]\nAborting ... found error."}
Attribution
Ansuman Satpathy, Stanford

Reference Source Details

Genome Assembly
GRCh38

File Format Specifications

1 item
Page
Description
Type
Download
Standardized File Format
Preview
10X Genomics Peaks Bedfile
file format specification

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (male) Jurkat cell line treated with 100 ng/mL phorbol 13-acetate 12-myristate for 4 hours, 5 μg/mL T-cell surface glycoprotein CD3 gamma chain for 4 hours; Homo sapiens (female) K562 cell line modified with CRISPRi Sp-dCas9-KOX1-KRAB; ... and 8 more samples

Files This File Derives From

1 item
Accession
File Set
File Format
Content Type
Lab
File Size
Upload Status
tsv
fragments
Ansuman Satpathy, Stanford
7.8 GB
validation exempted