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IGVFFI8318PQLH

released
validation exempted
File Set
IGVFDS2018URDY(10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix)
Summary
GRCh38 peaks
Analysis Step Version
/analysis-step-versions/699d6738-4033-4afc-b6f3-1d82a80e0b41/
File Format
bed
Content Type
peaks
Aliases
ansuman-satpathy:igvf10_peaks_10x1
md5sum
2979cc6717aa4bae4098efa856b23ea8
Content MD5sum
b5e256e98ebd15e05c6ab98ffc74ebe0
File Size
1.6 MB
Submitted File Name
/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf10/e10l1_peaks.bed
Checkfiles Version
v14
Validation Error Detail
{"md5sum": "original md5sum b5e256e98ebd15e05c6ab98ffc74ebe0 does not match newly calculated md5sum 2979cc6717aa4bae4098efa856b23ea8.", "validate_files": "Error [file=/home/ubuntu/igvf-files/2025/01/28/d0d796bb-9bd7-4712-a2b8-ae957fb74b44/IGVFFI8318PQLH.bed.gz, line=191173]: chrom KI270728.1 not found [KI270728.1\t232268\t233165]\nAborting ... found error."}

Reference Source Details

Genome Assembly
GRCh38

File Format Specifications

Samples

2 items
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Jurkat cell line, male, Homo sapiens treated with 100 ng/mL phorbol 13-acetate 12-myristate for 4 hours, 5 μg/mL T-cell surface glycoprotein CD3 gamma chain for 4 hours; K562 cell line, female, Homo sapiens modified with CRISPRi Sp-dCas9-KOX1-KRAB; ... and 8 more samples
MultiplexedSample
multiplexed sample: Jurkat cell line, male, Homo sapiens treated with 100 ng/mL phorbol 13-acetate 12-myristate for 4 hours, 5 μg/mL T-cell surface glycoprotein CD3 gamma chain for 4 hours; K562 cell line, female, Homo sapiens modified with CRISPRi Sp-dCas9-KOX1-KRAB; ... and 8 more samples

Files This File Derives From

1 item
Accession
File Set
File Format
Content Type
Lab
File Size
Upload Status
tsv
fragments
Ansuman Satpathy, Stanford
7.8 GB
validation exempted

Attribution

Award
HG011972
Principal Investigator(s)
Contact P.I.
Jesse Engreitz
Lab
Ansuman Satpathy, Stanford