IGVFFI8243SXOZ

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2873EPIU(CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci)

Summary

GRCh38 GENCODE 32 unfiltered local differential expression

Analysis Step Version

/analysis-step-versions/4cfc022a-ff63-4d13-99f7-257a6bfe4bd7/

File Format

csv

Content Type

unfiltered local differential expression

Aliases

gary-hon:H9_shen_construct_sgRNA_Lenti_PrimaryAnalysis_DE_local

md5sum

3e96c1b9a391716f846b7aa189e72e39

Content MD5sum

5b333dbc5e6181f03f931f3b6d524dc4

File Size

4.1 KB

Submitted File Name

/project/GCRB/Hon_lab/s215194/IGVF/data_submission/reference_files/H9_shen_construct_sgRNA_Lenti_PrimaryAnalysis_DE_local.csv.gz

Checkfiles Version

v16

Attribution

Gary Hon, UT

(

HG011996 — Gary Hon

)

Reference Source Details

Genome Assembly

GRCh38

Transcriptome Annotation

GENCODE 32

File Format Specifications

1 item

Page

Description

Type

Download

Standardized File Format

Preview

pySpade Differential Expression table definitions

file format specification

pySpade_DE_table_definitions.pdf

Samples

4 items

Sample Terms

Summary

IGVFSM1608DJBB

InVitroSystem

Homo sapiens (female) H9 differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW272) modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library

IGVFSM5657YKPN

InVitroSystem

Homo sapiens (female) H9 differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW271) modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library

IGVFSM6628JOOL

InVitroSystem

Homo sapiens (female) H9 differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW270) modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library

IGVFSM9223FAYO

InVitroSystem

Homo sapiens (female) H9 differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW269) modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library