IGVFFI8232SKBR

released
validation exempted
File Set
IGVFDS8898JDCK(10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix)
Summary
fragments
Analysis Step Version
File Format
tsv
Content Type
fragments
Aliases
ansuman-satpathy:igvf5_fragments_10x4
md5sum
8406d984dcd39b21a7a1ccb6531efe37
Content MD5sum
bef83831f058ceb1fa27c014ee903fa9
File Size
6.1 GB
Submitted File Name
/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf5/e5l4_fragments.tsv.gz
Checkfiles Version
Validation Error Detail
{"tabular_file_error": {"schema": null, "error_number_limit": 1000, "number_of_errors": 1000, "extra-cell": {"count": 1000, "description": "This row has more values compared to the header row (the first row in the data source). A key concept is that all the rows in tabular data must have the same number of columns.", "details": [{"row_number": 52, "field_number": 2, "note": ""}, {"row_number": 52, "field_number": 3, "note": ""}]}, "error_types": ["extra-cell"]}}

File Format Specifications

Samples

4 items
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: H9 differentiated cell specimen induced to neuron for 6 days, female, Homo sapiens; H9 differentiated cell specimen induced to neuron for 6 days, female, Homo sapiens; ... and 6 more samples
MultiplexedSample
multiplexed sample: H9 differentiated cell specimen induced to neuron for 6 days, female, Homo sapiens; H9 differentiated cell specimen induced to neuron for 6 days, female, Homo sapiens; ... and 6 more samples
MultiplexedSample
multiplexed sample: H9 differentiated cell specimen induced to neuron for 6 days, female, Homo sapiens; H9 differentiated cell specimen induced to neuron for 6 days, female, Homo sapiens; ... and 6 more samples
MultiplexedSample
multiplexed sample: H9 differentiated cell specimen induced to neuron for 6 days, female, Homo sapiens; H9 differentiated cell specimen induced to neuron for 6 days, female, Homo sapiens; ... and 6 more samples

Files This File Derives From

16 items
fastq
reads
Ansuman Satpathy, Stanford
8.2 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
8.8 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
1.8 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
1.8 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
8.2 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
4.4 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
8.8 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
8.2 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
8.6 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
4.7 GB
validated

Files Derived From This File

2 items
tbi
index
index of IGVFFI8232SKBR
Ansuman Satpathy, Stanford
1.8 MB
validated
bed
peaks
GRCh38 peaks
Ansuman Satpathy, Stanford
2.4 MB
validation exempted

Attribution