IGVFFI8225EESE

released
validation exempted
File Set
IGVFDS2649QXJV(10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix)
Summary
fragments
Analysis Step Version
File Format
tsv
Content Type
fragments
Aliases
ansuman-satpathy:igvf4_fragments_10x1
md5sum
603cd5bab778208c8151d67fbf79d988
Content MD5sum
c18489fc0e8e984ba8706a718e5bf8e0
File Size
5.9 GB
Submitted File Name
/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf4/e4l1_fragments.tsv.gz
Checkfiles Version
Validation Error Detail
{"tabular_file_error": {"schema": null, "error_number_limit": 1000, "number_of_errors": 1000, "extra-cell": {"count": 1000, "description": "This row has more values compared to the header row (the first row in the data source). A key concept is that all the rows in tabular data must have the same number of columns.", "details": [{"row_number": 52, "field_number": 2, "note": ""}, {"row_number": 52, "field_number": 3, "note": ""}]}, "error_types": ["extra-cell"]}}

File Format Specifications

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (male) GM25256 (WTC-11) cell line treated with 50 ng/mL interleukin 4 for 1 day; Homo sapiens (male) GM25256 (WTC-11) cell line treated with 100 ng/mL macrophage colony-stimulating factor 1 for 7 days; ... and 13 more samples

Files This File Derives From

8 items
fastq
reads
Ansuman Satpathy, Stanford
17 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
17 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
3.7 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
17 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
17 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
9.3 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
9.4 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
3.7 GB
validated

Files Derived From This File

2 items
bed
peaks
GRCh38 peaks
Ansuman Satpathy, Stanford
2.0 MB
validation exempted
tbi
index
index of IGVFFI8225EESE
Ansuman Satpathy, Stanford
1.7 MB
validated

Attribution