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IGVFFI8189LVJD

released
validated
File Set
IGVFDS6753PKAH(single-cell ATAC-seq (SHARE-seq), single-cell RNA sequencing assay (SHARE-seq))
Summary
GRCm39 unfiltered fragments
Analysis Step Version
/analysis-step-versions/39c0498d-91f6-42de-8896-2fab1403f032/
File Format
bed
Content Type
fragments
Aliases
buenrostro-bernstein:IGVFDS6753PKAH_fragments
md5sum
0d1d691c538eea19ca875fe54ba18700
Content MD5sum
00ec998a33de8fc3bac1707bc5534975
File Size
1.3 GB
Submitted File Name
gs://fc-9649faf8-a4ec-4ca4-a975-498a1707d03c/submissions/1d455597-b132-452b-8b75-bf2db8c76d2e/single_cell_pipeline/d27d86fc-03ac-42f6-bfec-b20ab4d429df/call-atac/wf_atac/136b8c9c-de6b-4ca0-9be5-4abd61be8562/call-generate_fragments/SS-PKR-436.fragments.tsv.gz
Checkfiles Version
v20
Attribution
Jason Buenrostro, Broad

Reference Source Details

Genome Assembly
GRCm39

File Format Specifications

1 item
Page
Description
Type
Download
Standardized File Format
Preview
Specification of fragment file generated by https://github.com/IGVF/single-cell-pipeline
file format specification
standardized

Samples

1 item
Accession
Type
Sample Terms
Summary
Tissue
Mus musculus C57BL/6 brain tissue (cellular sub pool: SS-PKR 436)

Files This File Derives From

15 items
yaml
seqspec
Jason Buenrostro, Broad
1.3 KB
validated
yaml
seqspec
Jason Buenrostro, Broad
1.2 KB
validated
yaml
seqspec
Jason Buenrostro, Broad
1.3 KB
validated
yaml
seqspec
Jason Buenrostro, Broad
1.3 KB
validated
yaml
seqspec
Jason Buenrostro, Broad
1.3 KB
validated
fastq
reads
Jason Buenrostro, Broad
6.0 GB
validated
fastq
reads
Jason Buenrostro, Broad
10 GB
validated
fastq
reads
Jason Buenrostro, Broad
10 GB
validated
fastq
reads
Jason Buenrostro, Broad
8.7 GB
validated
fastq
reads
Jason Buenrostro, Broad
6.9 GB
validated

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tbi
index
index of IGVFFI8189LVJD
Jason Buenrostro, Broad
839 KB
validated