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IGVFFI8007AEGC

released
validated
File Set
IGVFDS5106XTZH(CRISPR knockout FACS screen targeting IL7R: alignments, fold change over control, guide quantifications)
Summary
custom assembly fold change over control
Analysis Step Version
/analysis-step-versions/6a1d20c7-c92f-47d6-8e3b-5c74b3e8eed2/
File Format
tsv
Content Type
fold change over control
Aliases
charles-gersbach:cd8-tcells-guide-quantifications-crispr-ko-tfome
md5sum
9628df6916c0e9e02b12599c4d58acf2
Content MD5sum
6690c9cfa955e09f16a16543e49a5bda
File Size
364 KB
Submitted File Name
/data/reddylab/Alex/IGVF/data_submissions/processed_data/AIM_2_T_cell_project_1/T6A_DESeq2_TFko_screen_wo_BATF3.simple.v2.txt.gz
Checkfiles Version
Legacy version of checkfiles

Reference Source Details

Genome Assembly
custom

File Format Specifications

Samples

4 items
Sample Terms
Summary
PrimaryCell
CD8-positive, alpha-beta memory T cell, Homo sapiens (sorting details: FACS bin for 90-100% expression of IL7R) modified with CRISPRko Sp-Cas9, transduced (lentivirus) with a guide library (MOI of 0.4)
PrimaryCell
CD8-positive, alpha-beta memory T cell, Homo sapiens (sorting details: FACS bin for 0-10% expression of IL7R) modified with CRISPRko Sp-Cas9, transduced (lentivirus) with a guide library (MOI of 0.4)
PrimaryCell
CD8-positive, alpha-beta memory T cell, Homo sapiens (sorting details: FACS bin for 0-10% expression of IL7R) modified with CRISPRko Sp-Cas9, transduced (lentivirus) with a guide library (MOI of 0.4)
PrimaryCell
CD8-positive, alpha-beta memory T cell, Homo sapiens (sorting details: FACS bin for 90-100% expression of IL7R) modified with CRISPRko Sp-Cas9, transduced (lentivirus) with a guide library (MOI of 0.4)

Files This File Derives From

1 item
Accession
File Set
File Format
Content Type
Lab
File Size
Upload Status
csv
guide quantifications
Charles Gersbach, Duke
147 KB
validated

Attribution

Award
HG012053
Principal Investigator(s)
Contact P.I.
Charles Gersbach
Lab
Charles Gersbach, Duke