IGVFFI7721GQHJ

preview
validated
1{
2    "@context": "/terms/",
3    "@id": "/tabular-files/IGVFFI7721GQHJ/",
4    "@type": [
5        "TabularFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI7721GQHJ",
10    "aliases": [
11        "jesse-engreitz:PPIF_promoter_lentiMPRA_MPRAsnakeflow_results_file"
12    ],
13    "analysis_step_version": "/analysis-step-versions/c3ad4525-87d0-4d22-9410-f3e616d7cb9c/",
14    "assay_titles": [
15        "lentiMPRA"
16    ],
17    "audit": {
18        "NOT_COMPLIANT": [
19            {
20                "category": "missing file format specifications",
21                "detail": "Tabular file [IGVFFI7721GQHJ](/tabular-files/IGVFFI7721GQHJ/) has no `file_format_specifications`. Tabular files, with the exception of vcf files, are expected to link to a file format specifications document describing the headers of the file.",
22                "level": 50,
23                "level_name": "NOT_COMPLIANT",
24                "name": "audit_file_no_file_format_specifications",
25                "path": "/tabular-files/IGVFFI7721GQHJ/"
26            }
27        ]
28    },
29    "award": {
30        "@id": "/awards/HG011972/",
31        "component": "functional characterization"
32    },
33    "barcode_map_for": [],
34    "content_md5sum": "7097308e7d7c1da216fced783ec0c963",
35    "content_type": "reporter experiment",
36    "controlled_access": false,
37    "creation_timestamp": "2024-12-11T18:48:05.236228+00:00",
38    "derived_from": [
39        "/sequence-files/IGVFFI2302GGYX/",
40        "/sequence-files/IGVFFI4246ABNZ/",
41        "/sequence-files/IGVFFI4404HHXN/",
42        "/sequence-files/IGVFFI3258ZIPG/",
43        "/sequence-files/IGVFFI7244QLGY/",
44        "/sequence-files/IGVFFI4975PFEA/",
45        "/sequence-files/IGVFFI4195XWOV/",
46        "/sequence-files/IGVFFI9339WALF/",
47        "/sequence-files/IGVFFI7462HWBH/",
48        "/sequence-files/IGVFFI8618TEYN/",
49        "/sequence-files/IGVFFI4518NPFP/",
50        "/sequence-files/IGVFFI7531OBRW/",
51        "/sequence-files/IGVFFI7129JGHL/",
52        "/sequence-files/IGVFFI9536PJTO/",
53        "/sequence-files/IGVFFI4853ZPEU/",
54        "/sequence-files/IGVFFI7703MSOV/",
55        "/sequence-files/IGVFFI2905AIKP/",
56        "/sequence-files/IGVFFI2398KYLW/"
57    ],
58    "file_format": "tsv",
59    "file_set": {
60        "@id": "/analysis-sets/IGVFDS1376WOXJ/",
61        "@type": [
62            "AnalysisSet",
63            "FileSet",
64            "Item"
65        ],
66        "accession": "IGVFDS1376WOXJ",
67        "file_set_type": "principal analysis",
68        "samples": [
69            {
70                "@id": "/in-vitro-systems/IGVFSM5454DSMW/",
71                "@type": [
72                    "InVitroSystem",
73                    "Biosample",
74                    "Sample",
75                    "Item"
76                ],
77                "accession": "IGVFSM5454DSMW",
78                "classifications": [
79                    "cell line"
80                ],
81                "sample_terms": [
82                    {
83                        "@id": "/sample-terms/EFO_0001253/",
84                        "status": "released",
85                        "term_name": "THP-1"
86                    }
87                ],
88                "status": "preview",
89                "summary": "Homo sapiens (male) THP-1 cell line transduced (lentivirus) with a reporter library",
90                "taxa": "Homo sapiens"
91            },
92            {
93                "@id": "/in-vitro-systems/IGVFSM6934LXGU/",
94                "@type": [
95                    "InVitroSystem",
96                    "Biosample",
97                    "Sample",
98                    "Item"
99                ],
100                "accession": "IGVFSM6934LXGU",
101                "classifications": [
102                    "cell line"
103                ],
104                "sample_terms": [
105                    {
106                        "@id": "/sample-terms/EFO_0001253/",
107                        "status": "released",
108                        "term_name": "THP-1"
109                    }
110                ],
111                "status": "preview",
112                "summary": "Homo sapiens (male) THP-1 cell line transduced (lentivirus) with a reporter library",
113                "taxa": "Homo sapiens"
114            },
115            {
116                "@id": "/in-vitro-systems/IGVFSM9869SECP/",
117                "@type": [
118                    "InVitroSystem",
119                    "Biosample",
120                    "Sample",
121                    "Item"
122                ],
123                "accession": "IGVFSM9869SECP",
124                "classifications": [
125                    "cell line"
126                ],
127                "sample_terms": [
128                    {
129                        "@id": "/sample-terms/EFO_0001253/",
130                        "status": "released",
131                        "term_name": "THP-1"
132                    }
133                ],
134                "status": "preview",
135                "summary": "Homo sapiens (male) THP-1 cell line transduced (lentivirus) with a reporter library",
136                "taxa": "Homo sapiens"
137            }
138        ],
139        "status": "preview",
140        "summary": "lentiMPRA: reporter experiment"
141    },
142    "file_size": 51400,
143    "gene_list_for": [],
144    "href": "/tabular-files/IGVFFI7721GQHJ/@@download/IGVFFI7721GQHJ.tsv.gz",
145    "input_file_for": [
146        "/tabular-files/IGVFFI4482JZAD/"
147    ],
148    "integrated_in": [],
149    "lab": {
150        "@id": "/labs/jesse-engreitz/",
151        "title": "Jesse Engreitz, Stanford"
152    },
153    "loci_list_for": [],
154    "md5sum": "824b9e461411ce62663f1297f5301383",
155    "quality_metrics": [],
156    "s3_uri": "s3://igvf-files/2024/12/11/9c893a8e-f5f0-4a81-bae8-3a1a0bc854e1/IGVFFI7721GQHJ.tsv.gz",
157    "schema_version": "15",
158    "status": "preview",
159    "submitted_by": {
160        "@id": "/users/f9e7cd82-a407-4a20-89ee-f4dc668b0cbe/",
161        "title": "Michael Montgomery"
162    },
163    "submitted_file_name": "PPIF_promoter_lentiMPRA_MPRAsnakeflow_results.tsv.gz",
164    "summary": "reporter experiment",
165    "upload_status": "validated",
166    "uuid": "9c893a8e-f5f0-4a81-bae8-3a1a0bc854e1",
167    "workflow": {
168        "@id": "/workflows/IGVFWF6032PEGT/",
169        "name": "MPRAsnakeflow",
170        "uniform_pipeline": true
171    }
172}