IGVFFI7692IIDT

released

validated

File Set

IGVFDS9720UJIP(HiCAR: bin paired count, differential chromatin contact quantifications)

Summary

GRCh38 differential chromatin contact quantifications

Analysis Step Version

/analysis-step-versions/0622140a-5e26-4deb-a308-89561ca11e22/

File Format

csv

Content Type

differential chromatin contact quantifications

Aliases

charles-gersbach:tabular-file-crispra-stim-ctrl-region3-DEanalysis

md5sum

24570af0c93854d78e324bab204c53f4

Content MD5sum

1315b0eec35c4c42591a30cfd2eefa5c

File Size

7.8 KB

Submitted File Name

/hpc/group/gersbachlab/tda17/IGVF_data_files/HiCAR/output/Count_matrix_and_DESeq2/CRISPRa.stim_vs_ctrl_Union_in_TA448_10kb_DE_results.csv.gz

Reference Source Details

Genome Assembly

GRCh38

File Format Specifications

1 item

Page

Description

Type

Download

Preview

DESeq2 results

file format specification

DESeq2 results file format specification HiCAR.pdf

Samples

6 items

Sample Terms

Summary

IGVFSM1098IEON

InVitroSystem

GM25256 (WTC-11)

GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 42 days, male, Homo sapiens transfected with a guide library

IGVFSM1839OFIJ

InVitroSystem

GM25256 (WTC-11)

GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 42 days, male, Homo sapiens treated with 1 μM Endothelin-1 for 3 days, transfected with a guide library

IGVFSM3768JSRU

InVitroSystem

GM25256 (WTC-11)

GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 42 days, male, Homo sapiens transfected with a guide library

IGVFSM5123PXCO

InVitroSystem

GM25256 (WTC-11)

GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 42 days, male, Homo sapiens transfected with a guide library

IGVFSM6802DUZM

InVitroSystem

GM25256 (WTC-11)

GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 42 days, male, Homo sapiens treated with 1 μM Endothelin-1 for 3 days, transfected with a guide library

IGVFSM7610LWOV

InVitroSystem

GM25256 (WTC-11)

GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 42 days, male, Homo sapiens treated with 1 μM Endothelin-1 for 3 days, transfected with a guide library