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IGVFFI7585TQDT

released
validation exempted
File Set
IGVFDS2649QXJV(10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix)
Summary
GRCh38 peaks
Analysis Step Version
/analysis-step-versions/699d6738-4033-4afc-b6f3-1d82a80e0b41/
File Format
bed
Content Type
peaks
Aliases
ansuman-satpathy:igvf4_peaks_10x1
md5sum
b417d7430961f324aa70938d4d1b8c7b
Content MD5sum
3b099b5c764e0be9ce8a37c1820abbd0
File Size
2.0 MB
Submitted File Name
/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf4/e4l1_peaks.bed
Checkfiles Version
v14
Validation Error Detail
{"md5sum": "original md5sum 3b099b5c764e0be9ce8a37c1820abbd0 does not match newly calculated md5sum b417d7430961f324aa70938d4d1b8c7b.", "validate_files": "Error [file=/home/ubuntu/igvf-files/2025/01/28/3ec1f728-c8dd-4558-92dd-923e8962f30e/IGVFFI7585TQDT.bed.gz, line=239077]: chrom KI270728.1 not found [KI270728.1\t232273\t233169]\nAborting ... found error."}
Attribution
Ansuman Satpathy, Stanford

Reference Source Details

Genome Assembly
GRCh38

File Format Specifications

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (male) GM25256 (WTC-11) cell line treated with 50 ng/mL interleukin 4 for 1 day; Homo sapiens (male) GM25256 (WTC-11) cell line treated with 100 ng/mL macrophage colony-stimulating factor 1 for 7 days; ... and 13 more samples

Files This File Derives From

1 item
Accession
File Set
File Format
Content Type
Lab
File Size
Upload Status
tsv
fragments
Ansuman Satpathy, Stanford
5.9 GB
validation exempted