IGVFFI7472XTOL

released
validation exempted
1{
2    "@context": "/terms/",
3    "@id": "/tabular-files/IGVFFI7472XTOL/",
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9    "accession": "IGVFFI7472XTOL",
10    "aliases": [
11        "ansuman-satpathy:igvf11_peaks_10x3"
12    ],
13    "analysis_step_version": "/analysis-step-versions/699d6738-4033-4afc-b6f3-1d82a80e0b41/",
14    "assay_titles": [
15        "10x multiome with MULTI-seq"
16    ],
17    "assembly": "GRCh38",
18    "audit": {},
19    "award": {
20        "@id": "/awards/HG011972/",
21        "component": "functional characterization"
22    },
23    "barcode_map_for": [],
24    "checkfiles_version": "v14",
25    "content_md5sum": "7eb4cd206c7fc2eb56b9d5b324344c5e",
26    "content_type": "peaks",
27    "controlled_access": false,
28    "creation_timestamp": "2025-01-28T06:08:48.541401+00:00",
29    "derived_from": [
30        "/tabular-files/IGVFFI2578BIPG/"
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36            "description": "10X Genomics Peaks Bedfile"
37        }
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40    "file_set": {
41        "@id": "/analysis-sets/IGVFDS7903FOXV/",
42        "@type": [
43            "AnalysisSet",
44            "FileSet",
45            "Item"
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47        "accession": "IGVFDS7903FOXV",
48        "controlled_access": false,
49        "data_use_limitation_summaries": [
50            "No limitations"
51        ],
52        "file_set_type": "intermediate analysis",
53        "samples": [
54            {
55                "@id": "/multiplexed-samples/IGVFSM6160ZDRZ/",
56                "@type": [
57                    "MultiplexedSample",
58                    "Sample",
59                    "Item"
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61                "accession": "IGVFSM6160ZDRZ",
62                "classifications": [
63                    "differentiated cell specimen",
64                    "multiplexed sample"
65                ],
66                "disease_terms": [],
67                "modifications": [],
68                "sample_terms": [
69                    {
70                        "@id": "/sample-terms/EFO_0005904/",
71                        "status": "released",
72                        "term_name": "H7-hESC"
73                    },
74                    {
75                        "@id": "/sample-terms/EFO_0009747/",
76                        "status": "released",
77                        "term_name": "GM25256 (WTC-11)"
78                    }
79                ],
80                "status": "released",
81                "summary": "multiplexed sample: Homo sapiens (female) H7-hESC differentiated cell specimen; Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 6 days; ... and 10 more samples",
82                "taxa": "Homo sapiens",
83                "treatments": []
84            }
85        ],
86        "status": "released",
87        "summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
88    },
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90    "gene_list_for": [],
91    "href": "/tabular-files/IGVFFI7472XTOL/@@download/IGVFFI7472XTOL.bed.gz",
92    "input_file_for": [],
93    "integrated_in": [],
94    "lab": {
95        "@id": "/labs/ansuman-satpathy/",
96        "title": "Ansuman Satpathy, Stanford"
97    },
98    "loci_list_for": [],
99    "md5sum": "ace95c33aab9d1a3376067f396a8dacb",
100    "primer_design_for": [],
101    "quality_metrics": [],
102    "release_timestamp": "2025-03-07T06:05:06.435395+00:00",
103    "s3_uri": "s3://igvf-files/2025/01/28/eaa91d6c-4176-4fb3-aab8-2488dbb751d8/IGVFFI7472XTOL.bed.gz",
104    "schema_version": "15",
105    "status": "released",
106    "submitted_by": {
107        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
108        "title": "Christopher Mcginnis"
109    },
110    "submitted_file_name": "/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf11/e11l3_peaks.bed",
111    "summary": "GRCh38 peaks",
112    "upload_status": "validation exempted",
113    "uuid": "eaa91d6c-4176-4fb3-aab8-2488dbb751d8",
114    "validation_error_detail": "{\"md5sum\": \"original md5sum 7eb4cd206c7fc2eb56b9d5b324344c5e does not match newly calculated md5sum ace95c33aab9d1a3376067f396a8dacb.\", \"validate_files\": \"Error [file=/home/ubuntu/igvf-files/2025/01/28/eaa91d6c-4176-4fb3-aab8-2488dbb751d8/IGVFFI7472XTOL.bed.gz, line=236024]: chrom KI270728.1 not found [KI270728.1\\t232274\\t233170]\\nAborting ... found error.\"}",
115    "workflow": {
116        "@id": "/workflows/IGVFWF1453HVEC/",
117        "name": "Satpathy Cell Ranger",
118        "uniform_pipeline": false
119    }
120}