IGVFFI7417ASXN

released
validated
{
    "@context": "/terms/",
    "@id": "/tabular-files/IGVFFI7417ASXN/",
    "@type": [
        "TabularFile",
        "File",
        "Item"
    ],
    "accession": "IGVFFI7417ASXN",
    "aliases": [
        "charles-gersbach:tabular-file-bulk-atac-DEanalysis"
    ],
    "analysis_step_version": "/analysis-step-versions/0fab42c4-4f3c-468e-a051-3f1e7606fba6/",
    "assay_titles": [
        "ATAC-seq"
    ],
    "assembly": "GRCh38",
    "audit": {},
    "award": {
        "@id": "/awards/HG012053/",
        "component": "functional characterization"
    },
    "barcode_map_for": [],
    "content_md5sum": "7fce4f4fff56bb86c344f966bb05bab8",
    "content_type": "fold change over control",
    "controlled_access": false,
    "creation_timestamp": "2024-10-28T17:07:12.513293+00:00",
    "derived_from": [
        "/tabular-files/IGVFFI9763CJKG/"
    ],
    "file_format": "csv",
    "file_format_specifications": [
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    ],
    "file_set": {
        "@id": "/analysis-sets/IGVFDS9490WNXZ/",
        "accession": "IGVFDS9490WNXZ",
        "file_set_type": "principal analysis",
        "samples": [
            {
                "@id": "/in-vitro-systems/IGVFSM7187NNQU/",
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                "classifications": [
                    "differentiated cell specimen"
                ],
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                    {
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                        "status": "released",
                        "term_name": "GM25256 (WTC-11)"
                    }
                ],
                "status": "released",
                "summary": "GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 28 days, male, Homo sapiens",
                "targeted_sample_term": {
                    "@id": "/sample-terms/CL_0000746/",
                    "status": "released",
                    "term_name": "cardiac muscle cell"
                },
                "taxa": "Homo sapiens"
            },
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                        "status": "released",
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                    }
                ],
                "status": "released",
                "summary": "GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 28 days, male, Homo sapiens",
                "targeted_sample_term": {
                    "@id": "/sample-terms/CL_0000746/",
                    "status": "released",
                    "term_name": "cardiac muscle cell"
                },
                "taxa": "Homo sapiens"
            },
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                        "status": "released",
                        "term_name": "GM25256 (WTC-11)"
                    }
                ],
                "status": "released",
                "summary": "GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 28 days, male, Homo sapiens treated with 4 μM GSK3 inhibition for 7 days",
                "targeted_sample_term": {
                    "@id": "/sample-terms/CL_0000746/",
                    "status": "released",
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                },
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                    }
                ]
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                "classifications": [
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                ],
                "sample_terms": [
                    {
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                        "status": "released",
                        "term_name": "GM25256 (WTC-11)"
                    }
                ],
                "status": "released",
                "summary": "GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 28 days, male, Homo sapiens treated with 4 μM GSK3 inhibition for 7 days",
                "targeted_sample_term": {
                    "@id": "/sample-terms/CL_0000746/",
                    "status": "released",
                    "term_name": "cardiac muscle cell"
                },
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                        "status": "released",
                        "term_name": "GM25256 (WTC-11)"
                    }
                ],
                "status": "released",
                "summary": "GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 28 days, male, Homo sapiens",
                "targeted_sample_term": {
                    "@id": "/sample-terms/CL_0000746/",
                    "status": "released",
                    "term_name": "cardiac muscle cell"
                },
                "taxa": "Homo sapiens"
            },
            {
                "@id": "/in-vitro-systems/IGVFSM9172PRNN/",
                "accession": "IGVFSM9172PRNN",
                "classifications": [
                    "differentiated cell specimen"
                ],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/EFO_0009747/",
                        "status": "released",
                        "term_name": "GM25256 (WTC-11)"
                    }
                ],
                "status": "released",
                "summary": "GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 28 days, male, Homo sapiens treated with 4 μM GSK3 inhibition for 7 days",
                "targeted_sample_term": {
                    "@id": "/sample-terms/CL_0000746/",
                    "status": "released",
                    "term_name": "cardiac muscle cell"
                },
                "taxa": "Homo sapiens",
                "treatments": [
                    {
                        "@id": "/treatments/98ba0c5c-8005-41bc-bcbb-6c6eff41af4e/",
                        "purpose": "antagonist",
                        "status": "released",
                        "summary": "Treatment of 4 μM GSK3 inhibition for 7 days",
                        "treatment_term_name": "GSK3 inhibition"
                    }
                ]
            }
        ],
        "status": "released",
        "summary": "ATAC-seq: fold change over control, peak quantifications"
    },
    "file_size": 4865252,
    "gene_list_for": [],
    "href": "/tabular-files/IGVFFI7417ASXN/@@download/IGVFFI7417ASXN.csv.gz",
    "input_file_for": [],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/charles-gersbach/",
        "title": "Charles Gersbach, Duke"
    },
    "loci_list_for": [],
    "md5sum": "0cf3ea297c9b871ea52fbcde5bdf48c9",
    "release_timestamp": "2024-12-03T20:43:50.477309+00:00",
    "s3_uri": "s3://igvf-files/2024/10/28/13412717-b523-4c1c-b3d5-85b92c93f2b1/IGVFFI7417ASXN.csv.gz",
    "schema_version": "13",
    "status": "released",
    "submitted_by": {
        "@id": "/users/3782ce69-0e9f-4b46-91f9-4578139785c7/",
        "title": "Ruhi Rai"
    },
    "submitted_file_name": "/hpc/group/gersbachlab/tda17/IGVF_data_files/ATAC/atac_DE_analysis.csv.gz",
    "summary": "GRCh38 fold change over control",
    "upload_status": "validated",
    "uuid": "13412717-b523-4c1c-b3d5-85b92c93f2b1"
}