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IGVFFI7411STSC

released
validation exempted
File Set
IGVFDS2018URDY(10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix)
Summary
GRCh38 peaks
Analysis Step Version
/analysis-step-versions/699d6738-4033-4afc-b6f3-1d82a80e0b41/
File Format
bed
Content Type
peaks
Aliases
ansuman-satpathy:igvf10_peaks_10x2
md5sum
2dddd59888acec9f879c65812c93b776
Content MD5sum
cf11d640a4b43888a2aba2548b72522f
File Size
1.6 MB
Submitted File Name
/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf10/e10l2_peaks.bed
Checkfiles Version
v14
Validation Error Detail
{"md5sum": "original md5sum cf11d640a4b43888a2aba2548b72522f does not match newly calculated md5sum 2dddd59888acec9f879c65812c93b776.", "validate_files": "Error [file=/home/ubuntu/igvf-files/2025/01/28/79774340-e7e6-45b9-851f-6104376fb0fd/IGVFFI7411STSC.bed.gz, line=190232]: chrom KI270728.1 not found [KI270728.1\t232271\t233171]\nAborting ... found error."}

Reference Source Details

Genome Assembly
GRCh38

File Format Specifications

Samples

2 items
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Jurkat cell line, male, Homo sapiens treated with 100 ng/mL phorbol 13-acetate 12-myristate for 4 hours, 5 μg/mL T-cell surface glycoprotein CD3 gamma chain for 4 hours; K562 cell line, female, Homo sapiens modified with CRISPRi Sp-dCas9-KOX1-KRAB; ... and 8 more samples
MultiplexedSample
multiplexed sample: Jurkat cell line, male, Homo sapiens treated with 100 ng/mL phorbol 13-acetate 12-myristate for 4 hours, 5 μg/mL T-cell surface glycoprotein CD3 gamma chain for 4 hours; K562 cell line, female, Homo sapiens modified with CRISPRi Sp-dCas9-KOX1-KRAB; ... and 8 more samples

Files This File Derives From

1 item
Accession
File Set
File Format
Content Type
Lab
File Size
Upload Status
tsv
fragments
Ansuman Satpathy, Stanford
8.8 GB
validation exempted

Attribution

Award
HG011972
Principal Investigator(s)
Contact P.I.
Jesse Engreitz
Lab
Ansuman Satpathy, Stanford