IGVFFI7268PNWE

released
validation exempted
File Set
IGVFDS3751NDQI(10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix)
Summary
fragments
Analysis Step Version
File Format
tsv
Content Type
fragments
Aliases
ansuman-satpathy:igvf4_fragments_10x2
md5sum
f46d540ae8ed8401ec52482ef48ec081
Content MD5sum
2c70f3fcc95d95cc815ca2b60383e01b
File Size
6.8 GB
Submitted File Name
/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf4/e4l2_fragments.tsv.gz
Checkfiles Version
Validation Error Detail
{"tabular_file_error": {"schema": null, "error_number_limit": 1000, "number_of_errors": 1000, "extra-cell": {"count": 1000, "description": "This row has more values compared to the header row (the first row in the data source). A key concept is that all the rows in tabular data must have the same number of columns.", "details": [{"row_number": 52, "field_number": 2, "note": ""}, {"row_number": 52, "field_number": 3, "note": ""}]}, "error_types": ["extra-cell"]}}
Attribution

File Format Specifications

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (male) GM25256 (WTC-11) cell line treated with 50 ng/mL interleukin 4 for 1 day; Homo sapiens (male) GM25256 (WTC-11) cell line treated with 100 ng/mL macrophage colony-stimulating factor 1 for 7 days; ... and 13 more samples

Files This File Derives From

8 items
fastq
reads
Ansuman Satpathy, Stanford
20 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
20 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
4.1 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
11 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
4.1 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
11 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
20 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
19 GB
validated

Files Derived From This File

2 items
bed
peaks
GRCh38 peaks
Ansuman Satpathy, Stanford
2.0 MB
validation exempted
tbi
index
index of IGVFFI7268PNWE
Ansuman Satpathy, Stanford
1.9 MB
validated