IGVFFI7266NWTF

preview
validated
This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS4389OUWU(CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci)
Summary
GRCh38 GENCODE 32 unfiltered global differential expression
Analysis Step Version
File Format
csv
Content Type
unfiltered global differential expression
Aliases
gary-hon:TF_Perturb_Seq_Pilot_Lenti_CM_PrimaryAnalysis_DE_global
md5sum
96e36a0282823b2127cb6d119c5fa7e4
Content MD5sum
0d832d0d5b2012bfd2797670b9b97cf4
File Size
734 KB
Submitted File Name
/project/GCRB/Hon_lab/s215194/IGVF/data_submission/reference_files/TF_Perturb_Seq_Pilot_Lenti_CM_PrimaryAnalysis_DE_global.csv.gz
Checkfiles Version
Attribution

Reference Source Details

Genome Assembly
GRCh38
Transcriptome Annotation
GENCODE 32

File Format Specifications

1 item
Page
Description
Type
Download
Standardized File Format
Preview

Samples

4 items
Sample Terms
Summary
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW279) modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW280) modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW278) modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW277) modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library

Files This File Derives From

2 items
hdf5
filtered feature barcode matrix
Gary Hon, UT
448 MB
validated
pkl
raw feature barcode matrix
Gary Hon, UT
395 MB
validated