{
"@context": "/terms/",
"@id": "/tabular-files/IGVFFI7138DMIL/",
"@type": [
"TabularFile",
"File",
"Item"
],
"accession": "IGVFFI7138DMIL",
"aliases": [
"ansuman-satpathy:igvf4_multiseq_count_matrix_10x2"
],
"analysis_step_version": "/analysis-step-versions/49020a48-9224-4d9c-8d55-2264aaf17a1f/",
"assay_titles": [
"10x multiome with MULTI-seq"
],
"audit": {},
"award": {
"@id": "/awards/HG011972/",
"component": "functional characterization"
},
"barcode_map_for": [],
"checkfiles_version": "v16",
"content_md5sum": "d4098d302109fed8a2fe637ee99ba86e",
"content_type": "cell hashing barcodes",
"controlled_access": false,
"creation_timestamp": "2025-02-19T23:30:38.972692+00:00",
"derived_from": [
"/sequence-files/IGVFFI2329UCDW/",
"/sequence-files/IGVFFI9919EKYJ/",
"/sequence-files/IGVFFI6779DTGR/",
"/sequence-files/IGVFFI8887TAYJ/",
"/sequence-files/IGVFFI7881CALF/",
"/sequence-files/IGVFFI2701FCYJ/",
"/sequence-files/IGVFFI8645WDPG/",
"/sequence-files/IGVFFI8085XVBU/"
],
"file_format": "tsv",
"file_format_specifications": [
"/documents/5bcaecf9-d8dd-4126-bcc8-696cf6d530d3/"
],
"file_set": {
"@id": "/analysis-sets/IGVFDS3751NDQI/",
"@type": [
"AnalysisSet",
"FileSet",
"Item"
],
"accession": "IGVFDS3751NDQI",
"file_set_type": "intermediate analysis",
"samples": [
{
"@id": "/multiplexed-samples/IGVFSM7068ZFMY/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM7068ZFMY",
"classifications": [
"cell line",
"multiplexed sample"
],
"disease_terms": [],
"modifications": [],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0009747/",
"status": "released",
"term_name": "GM25256 (WTC-11)"
}
],
"status": "released",
"summary": "multiplexed sample: Homo sapiens (male) GM25256 (WTC-11) cell line treated with 50 ng/mL interleukin 4 for 1 day; Homo sapiens (male) GM25256 (WTC-11) cell line treated with 100 ng/mL macrophage colony-stimulating factor 1 for 7 days; ... and 13 more samples",
"taxa": "Homo sapiens",
"treatments": [
{
"@id": "/treatments/2987f643-86dc-4113-af7e-d4b5d162b5c8/",
"purpose": "differentiation",
"status": "in progress",
"summary": "Treatment of 0.025 ng/mL acetylated low density lipoprotein for 1 day",
"treatment_term_name": "acetylated low density lipoprotein"
},
{
"@id": "/treatments/729630f8-aa05-47f5-9cba-ee7a264da593/",
"purpose": "differentiation",
"status": "in progress",
"summary": "Treatment of 50 ng/mL interleukin 4 for 1 day",
"treatment_term_name": "interleukin 4"
},
{
"@id": "/treatments/ae8065d2-85f3-498e-b4f2-01a38756d48e/",
"purpose": "differentiation",
"status": "in progress",
"summary": "Treatment of 20 ng/mL interferon gamma for 1 day",
"treatment_term_name": "interferon gamma"
},
{
"@id": "/treatments/bec71d5e-97ef-489a-acb7-5336691b6c39/",
"purpose": "differentiation",
"status": "in progress",
"summary": "Treatment of 100 ng/mL macrophage colony-stimulating factor 1 for 7 days",
"treatment_term_name": "macrophage colony-stimulating factor 1"
}
]
}
],
"status": "released",
"summary": "10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix"
},
"file_size": 1177663,
"gene_list_for": [],
"href": "/tabular-files/IGVFFI7138DMIL/@@download/IGVFFI7138DMIL.tsv.gz",
"input_file_for": [],
"integrated_in": [],
"lab": {
"@id": "/labs/ansuman-satpathy/",
"title": "Ansuman Satpathy, Stanford"
},
"loci_list_for": [],
"md5sum": "22d5a28ff9b824d21472dd583690ad7d",
"quality_metrics": [],
"release_timestamp": "2025-03-07T06:04:23.662053+00:00",
"s3_uri": "s3://igvf-files/2025/02/19/fa764a14-4109-4db7-9fec-01995ac74213/IGVFFI7138DMIL.tsv.gz",
"schema_version": "15",
"status": "released",
"submitted_by": {
"@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
"title": "Christopher Mcginnis"
},
"submitted_file_name": "/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/multi_tsvs/e4l2_tag_mtx.tsv.gz",
"summary": "cell hashing barcodes",
"upload_status": "validated",
"uuid": "fa764a14-4109-4db7-9fec-01995ac74213",
"workflow": {
"@id": "/workflows/IGVFWF1453HVEC/",
"name": "Satpathy Cell Ranger",
"uniform_pipeline": false
}
}