Home

IGVFFI6946EKMX

released
validation exempted
File Set
IGVFDS1949MRJM(single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq): cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix)
Summary
GRCh38 peaks
Analysis Step Version
/analysis-step-versions/699d6738-4033-4afc-b6f3-1d82a80e0b41/
File Format
bed
Content Type
peaks
Aliases
ansuman-satpathy:igvf5_peaks_10x2
md5sum
2755f7de65912ce097c7f51988586d31
Content MD5sum
4780d0075d6b75c4216fcc8fea054b05
File Size
2.4 MB
Submitted File Name
/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf5/e5l2_peaks.bed
Checkfiles Version
v14
Validation Error Detail
{"md5sum": "original md5sum 4780d0075d6b75c4216fcc8fea054b05 does not match newly calculated md5sum 2755f7de65912ce097c7f51988586d31.", "validate_files": "Error [file=/home/ubuntu/igvf-files/2025/01/28/c11df62e-67db-4c61-ab31-3f9b90de6631/IGVFFI6946EKMX.bed.gz, line=288515]: chrom KI270728.1 not found [KI270728.1\t232289\t233180]\nAborting ... found error."}
Attribution
Ansuman Satpathy, Stanford

Reference Source Details

Genome Assembly
GRCh38

File Format Specifications

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (female) H9 differentiated cell specimen induced to neuron for 6 days; Homo sapiens (female) H9 differentiated cell specimen induced to neuron for 6 days; ... and 6 more samples

Files This File Derives From

1 item
Accession
File Set
File Format
Content Type
Lab
File Size
Upload Status
tsv
fragments
Ansuman Satpathy, Stanford
6.1 GB
validation exempted