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IGVFFI6848AZTR

released
validation exempted
File Set
IGVFDS1147GIJW(SUPERSTARR: alignments, index, reporter genomic variant effects, reporter variants)
Summary
GRCh38 reporter variants
Analysis Step Version
/analysis-step-versions/c8de4554-6fda-4373-aa41-5574220df999/
File Format
tsv
Content Type
reporter variants
Aliases
tim-reddy:starr-seq-bird-input-file-P015
md5sum
dd91731e85bd02d1a8fed3f49d341d9b
Content MD5sum
96d30dfa801ba25b98cb7c3abbb89552
File Size
31 MB
Submitted File Name
/data/reddylab/Alex/IGVF/data_submissions/processed_data/AIM_1_STARR_seq/K562.starrseq.bird_input.spdi.pool15.txt.gz
Checkfiles Version
v16
Attribution
Bill Majoros, Duke

Reference Source Details

Genome Assembly
GRCh38

File Format Specifications

1 item
Page
Description
Type
Download
Preview
BIRD input file format as described in http://www.geneprediction.org/bird
file format specification

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
Homo sapiens (female) K562 cell line transfected with a reporter library

Files This File Derives From

2 items
bam
alignments
Tim Reddy, Duke
8.9 GB
validated
bam
alignments
Tim Reddy, Duke
7.5 GB
validated

Files Derived From This File

2 items
tsv
reporter genomic variant effects
GRCh38 reporter genomic variant effects
Bill Majoros, Duke
75 MB
validated
tsv
reporter genomic variant effects
GRCh38 reporter genomic variant effects
Bill Majoros, Duke
162 MB
validated