IGVFFI6774RPHJ

released
validation exempted
File Set
IGVFDS1583PWNS(10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix)
Summary
fragments
Analysis Step Version
File Format
tsv
Content Type
fragments
Aliases
ansuman-satpathy:igvf2_fragments_10x1
md5sum
c46d281cd46957f1f56476ce3326be6f
Content MD5sum
ef39a86dabd7b963e242b846c256d28b
File Size
6.9 GB
Submitted File Name
/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf2/e2l1_fragments.tsv.gz
Checkfiles Version
Validation Error Detail
{"tabular_file_error": {"schema": null, "error_number_limit": 1000, "number_of_errors": 1000, "extra-cell": {"count": 1000, "description": "This row has more values compared to the header row (the first row in the data source). A key concept is that all the rows in tabular data must have the same number of columns.", "details": [{"row_number": 52, "field_number": 2, "note": ""}, {"row_number": 52, "field_number": 3, "note": ""}]}, "error_types": ["extra-cell"]}}
Attribution

File Format Specifications

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (female) TeloHAEC cell line treated with 10 ng/mL tumor necrosis factor alpha for 4 hours; Homo sapiens (female) TeloHAEC cell line; ... and 7 more samples

Files This File Derives From

8 items
fastq
reads
Ansuman Satpathy, Stanford
16 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
3.3 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
3.3 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
16 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
8.8 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
8.6 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
16 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
16 GB
validated

Files Derived From This File

2 items
tbi
index
index of IGVFFI6774RPHJ
Ansuman Satpathy, Stanford
2.0 MB
validated
bed
peaks
GRCh38 peaks
Ansuman Satpathy, Stanford
1.4 MB
validation exempted