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IGVFFI6770EFUQ

preview
validated
This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS4003HZAB(CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci)
Summary
GRCh38 GENCODE 32 unfiltered global differential expression
Analysis Step Version
/analysis-step-versions/4cfc022a-ff63-4d13-99f7-257a6bfe4bd7/
File Format
csv
Content Type
unfiltered global differential expression
Aliases
gary-hon:CM_Pilot_2_Lenti_RNA_DE_global
md5sum
9f8c758279c6887f72762b8b48f814fe
Content MD5sum
5215b39ac0ecdbffe72993a2d7a5632d
File Size
273 KB
Submitted File Name
/project/GCRB/Hon_lab/s215194/IGVF/data_submission/reference_files/CM_Pilot_2_Lenti_RNA_DE_global.csv.gz
Checkfiles Version
v16
Attribution
Gary Hon, UT

Reference Source Details

Genome Assembly
GRCh38
Transcriptome Annotation
GENCODE 32

File Format Specifications

1 item
Page
Description
Type
Download
Standardized File Format
Preview
pySpade Differential Expression table definitions
file format specification

Samples

8 items
Sample Terms
Summary
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW262) modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW263) modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW264) modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW261) modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW268) modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW266) modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW267) modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 12 days (cellular sub pool: subpool_LW265) modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library

Files This File Derives From

2 items
pkl
raw feature barcode matrix
Gary Hon, UT
5.2 GB
validated
hdf5
filtered feature barcode matrix
Gary Hon, UT
443 MB
validated