IGVFFI6723VKSY

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/tabular-files/IGVFFI6723VKSY/",
4    "@type": [
5        "TabularFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI6723VKSY",
10    "aliases": [
11        "ansuman-satpathy:igvf13_multiseq_count_matrix_10x2"
12    ],
13    "analysis_step_version": "/analysis-step-versions/49020a48-9224-4d9c-8d55-2264aaf17a1f/",
14    "assay_titles": [
15        "10x multiome with MULTI-seq"
16    ],
17    "audit": {},
18    "award": {
19        "@id": "/awards/HG011972/",
20        "component": "functional characterization"
21    },
22    "barcode_map_for": [],
23    "checkfiles_version": "v16",
24    "content_md5sum": "68e758bb1d123edc3d12f711b5f1e42e",
25    "content_type": "cell hashing barcodes",
26    "controlled_access": false,
27    "creation_timestamp": "2025-02-19T23:35:33.046279+00:00",
28    "derived_from": [
29        "/sequence-files/IGVFFI8691TJUW/",
30        "/sequence-files/IGVFFI3497CDFB/",
31        "/sequence-files/IGVFFI1141CCDX/",
32        "/sequence-files/IGVFFI7629CSKK/",
33        "/sequence-files/IGVFFI2896BOKB/",
34        "/sequence-files/IGVFFI4834REVN/",
35        "/sequence-files/IGVFFI4807VSQN/",
36        "/sequence-files/IGVFFI0531BRKY/",
37        "/sequence-files/IGVFFI0160NPXK/",
38        "/sequence-files/IGVFFI3864GDMI/",
39        "/sequence-files/IGVFFI8904JEER/",
40        "/sequence-files/IGVFFI3710ODOK/"
41    ],
42    "file_format": "tsv",
43    "file_format_specifications": [
44        "/documents/5bcaecf9-d8dd-4126-bcc8-696cf6d530d3/"
45    ],
46    "file_set": {
47        "@id": "/analysis-sets/IGVFDS0226SGHL/",
48        "@type": [
49            "AnalysisSet",
50            "FileSet",
51            "Item"
52        ],
53        "accession": "IGVFDS0226SGHL",
54        "file_set_type": "intermediate analysis",
55        "samples": [
56            {
57                "@id": "/multiplexed-samples/IGVFSM7106DAZZ/",
58                "@type": [
59                    "MultiplexedSample",
60                    "Sample",
61                    "Item"
62                ],
63                "accession": "IGVFSM7106DAZZ",
64                "classifications": [
65                    "tissue",
66                    "multiplexed sample"
67                ],
68                "disease_terms": [
69                    {
70                        "@id": "/phenotype-terms/MONDO_0005010/",
71                        "@type": [
72                            "PhenotypeTerm",
73                            "OntologyTerm",
74                            "Item"
75                        ],
76                        "status": "released",
77                        "summary": "coronary artery disorder",
78                        "term_name": "coronary artery disorder"
79                    }
80                ],
81                "modifications": [],
82                "sample_terms": [
83                    {
84                        "@id": "/sample-terms/UBERON_0001626/",
85                        "status": "released",
86                        "term_name": "left coronary artery"
87                    }
88                ],
89                "status": "released",
90                "summary": "multiplexed sample: Homo sapiens (female, 48 years) left coronary artery tissue associated with coronary artery disorder; Homo sapiens (female, 73 years) left coronary artery tissue associated with coronary artery disorder; ... and 2 more samples",
91                "taxa": "Homo sapiens",
92                "treatments": []
93            }
94        ],
95        "status": "released",
96        "summary": "10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix"
97    },
98    "file_size": 62072,
99    "gene_list_for": [],
100    "href": "/tabular-files/IGVFFI6723VKSY/@@download/IGVFFI6723VKSY.tsv.gz",
101    "input_file_for": [],
102    "integrated_in": [],
103    "lab": {
104        "@id": "/labs/ansuman-satpathy/",
105        "title": "Ansuman Satpathy, Stanford"
106    },
107    "loci_list_for": [],
108    "md5sum": "fd71c629634363046cd27ad48162161c",
109    "quality_metrics": [],
110    "release_timestamp": "2025-03-22T00:43:54.983360+00:00",
111    "s3_uri": "s3://igvf-files/2025/02/19/eef2076e-b4e5-449e-a4d0-bfd0fe45b042/IGVFFI6723VKSY.tsv.gz",
112    "schema_version": "15",
113    "status": "released",
114    "submitted_by": {
115        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
116        "title": "Christopher Mcginnis"
117    },
118    "submitted_file_name": "/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/multi_tsvs/e13l2_tag_mtx.tsv.gz",
119    "summary": "cell hashing barcodes",
120    "upload_status": "validated",
121    "uuid": "eef2076e-b4e5-449e-a4d0-bfd0fe45b042",
122    "workflow": {
123        "@id": "/workflows/IGVFWF1453HVEC/",
124        "name": "Satpathy Cell Ranger",
125        "uniform_pipeline": false
126    }
127}