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IGVFFI6698WXZQ

released
validated
File Set
IGVFDS5833SGWM(SUPERSTARR: alignments, index, reporter genomic variant effects, reporter variants)
Summary
GRCh38 reporter genomic variant effects
Analysis Step Version
/analysis-step-versions/122238ae-e8eb-4836-95a7-299926412e1d/
File Format
tsv
Content Type
reporter genomic variant effects
Aliases
tim-reddy:starr-seq-bird-output-file-P013
md5sum
e9d26f72e4ffedd088efa1a8b3204ca1
Content MD5sum
867b207ba84a281929b005b232d32686
File Size
88 MB
Submitted File Name
/data/reddylab/Alex/IGVF/data_submissions/processed_data/AIM_1_STARR_seq/K562.starrseq.bird_output.spdi.pool13.txt.gz
Checkfiles Version
v14
Attribution
Bill Majoros, Duke

Reference Source Details

Genome Assembly
GRCh38

File Format Specifications

1 item
Page
Description
Type
Download
Preview
BIRD output file format as described in http://www.geneprediction.org/bird
file format specification

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
Homo sapiens (female) K562 cell line transfected with a reporter library

Files This File Derives From

1 item
Accession
File Set
File Format
Content Type
Lab
File Size
Upload Status
tsv
reporter variants
Bill Majoros, Duke
37 MB
validation exempted

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tsv
reporter genomic variant effects
GRCh38 reporter genomic variant effects
Bill Majoros, Duke
192 MB
validated