IGVFFI6686KVZP

released
validation exempted
File Set
IGVFDS4963SRAJ(single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq))
Summary
fragments
Analysis Step Version
File Format
tsv
Content Type
fragments
Aliases
ansuman-satpathy:igvf18_fragments_10x1
md5sum
ecc96fa422cbb7d8edf5ad1ae8941b8d
Content MD5sum
3e1224af3858925c84db7b7854095f2e
File Size
4.9 GB
Submitted File Name
/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf18/e18l1_fragments.tsv.gz
Checkfiles Version
Validation Error Detail
{"tabular_file_error": {"schema": null, "error_number_limit": 1000, "number_of_errors": 1000, "extra-cell": {"count": 1000, "description": "This row has more values compared to the header row (the first row in the data source). A key concept is that all the rows in tabular data must have the same number of columns.", "details": [{"row_number": 52, "field_number": 2, "note": ""}, {"row_number": 52, "field_number": 3, "note": ""}]}, "error_types": ["extra-cell"]}}
Attribution

File Format Specifications

1 item
Page
Description
Type
Download
Standardized File Format
Preview

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (female) IMR-90 cell line; Homo sapiens (female) MCF-7 cell line; ... and 17 more samples

Files This File Derives From

4 items
fastq
reads
Ansuman Satpathy, Stanford
22 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
13 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
22 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
5.5 GB
validated

Files Derived From This File

2 items
bed
peaks
GRCh38 peaks
Ansuman Satpathy, Stanford
1.6 MB
validation exempted
tbi
index
index of IGVFFI6686KVZP
Ansuman Satpathy, Stanford
1.6 MB
validated