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IGVFFI6630MFYW

released
validated
File Set
IGVFDS3278AFYF(lentiMPRA: reporter experiment, reporter experiment barcode)
Summary
GRCh38 reporter experiment
Analysis Step Version
/analysis-step-versions/c3ad4525-87d0-4d22-9410-f3e616d7cb9c/
File Format
tsv
Content Type
reporter experiment
md5sum
38d31915d0aab8f22878d678b649dde2
Content MD5sum
afb890d9ce4a0a858b90437b438d33df
File Size
19 MB
Submitted File Name
"/data/cephfs-2/unmirrored/groups/kircher/IGVF_data_submssion_TM/proximalPromotor/mprasnakeflow/results/experiment/HepG2/reporter_experiment.oligo.HepG2.defaultAssignment.default.min_oligo_threshold_10.tsv.gz"
Checkfiles Version
Legacy version of checkfiles
Submitter Comment
MPRAsnakeflow v0.3.0
Attribution
Nadav Ahituv, UCSF

Reference Source Details

Genome Assembly
GRCh38

File Format Specifications

1 item
Page
Description
Type
Download
Preview
IGVF MPRA reporter experiment format
file format specification

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
Homo sapiens (male) HepG2 pooled cell specimen transduced (lentivirus) with a reporter library

Files This File Derives From

55 items
fastq
reads
Nadav Ahituv, UCSF
2.1 GB
validated
fastq
reads
Nadav Ahituv, UCSF
998 MB
validated
fastq
reads
Nadav Ahituv, UCSF
2.0 GB
validated
fastq
reads
Nadav Ahituv, UCSF
1.0 GB
validated
fastq
reads
Nadav Ahituv, UCSF
1.4 GB
validated
fastq
reads
Nadav Ahituv, UCSF
826 MB
validated
fastq
reads
Nadav Ahituv, UCSF
804 MB
validated
fastq
reads
Nadav Ahituv, UCSF
523 MB
validated
fastq
reads
Nadav Ahituv, UCSF
2.1 GB
validated
fastq
reads
Nadav Ahituv, UCSF
2.1 GB
validated