IGVFFI6588PJQU

released

validation exempted

File Set

IGVFDS4570PZIO(10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix)

Summary

GRCh38 peaks

Analysis Step Version

/analysis-step-versions/699d6738-4033-4afc-b6f3-1d82a80e0b41/

File Format

bed

Content Type

peaks

Aliases

ansuman-satpathy:igvf16_peaks_10x4

md5sum

a6315ce645096af25e361d029c8f6b09

Content MD5sum

612784beb056862ddc4912863c7d1a0d

File Size

2.9 MB

Submitted File Name

/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf16/e16l4_peaks.bed.gz

Checkfiles Version

v14

Validation Error Detail

{"validate_files": "Error [file=/home/ubuntu/igvf-restricted-files/2025/02/14/9ceae26d-fe2f-4fe7-a075-3312d9bb86c5/IGVFFI6588PJQU.bed.gz, line=348721]: chrom KI270728.1 not found [KI270728.1\t232282\t233185]\nAborting ... found error."}

Reference Source Details

Genome Assembly

GRCh38

File Format Specifications

1 item

Page

Description

Type

Download

Preview

10X Genomics Peaks Bedfile

file format specification

header_peak_set_scATAC_mEB_d21_mm39_20241120.tsv

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM5245KVZO

MultiplexedSample

induced pluripotent stem cell

multiplexed sample: Homo sapiens (mixed sex) induced pluripotent stem differentiated cell specimen induced to islet of Langerhans for 11 days; Homo sapiens (mixed sex) induced pluripotent stem differentiated cell specimen induced to islet of Langerhans for 3 days; ... and 6 more samples