IGVFFI6324ICSV

released

validation exempted

File Set

IGVFDS4086WMME(10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix)

Summary

GRCh38 peaks

Analysis Step Version

/analysis-step-versions/699d6738-4033-4afc-b6f3-1d82a80e0b41/

File Format

bed

Content Type

peaks

Aliases

ansuman-satpathy:igvf16_peaks_10x5

md5sum

fc185b4d60d8b8b5189fc29d7533e43d

Content MD5sum

9b6b388b6541db052e6f237c48b688d1

File Size

2.8 MB

Submitted File Name

/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf16/e16l5_peaks.bed.gz

Checkfiles Version

v14

Validation Error Detail

{"validate_files": "Error [file=/home/ubuntu/igvf-restricted-files/2025/02/14/37d77363-7629-48ba-ad81-a893f5cc57cf/IGVFFI6324ICSV.bed.gz, line=340199]: chrom KI270728.1 not found [KI270728.1\t232276\t233171]\nAborting ... found error."}

Reference Source Details

Genome Assembly

GRCh38

File Format Specifications

1 item

Page

Description

Type

Download

Preview

10X Genomics Peaks Bedfile

file format specification

header_peak_set_scATAC_mEB_d21_mm39_20241120.tsv

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM1943HMCZ

MultiplexedSample

induced pluripotent stem cell

multiplexed sample: Homo sapiens (mixed sex) induced pluripotent stem differentiated cell specimen induced to islet of Langerhans for 11 days; Homo sapiens (mixed sex) induced pluripotent stem differentiated cell specimen induced to islet of Langerhans for 3 days; ... and 6 more samples