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IGVFFI6324ICSV

released
validation exempted
File Set
IGVFDS4086WMME(single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq))
Summary
GRCh38 peaks
Analysis Step Version
/analysis-step-versions/699d6738-4033-4afc-b6f3-1d82a80e0b41/
File Format
bed
Content Type
peaks
Aliases
ansuman-satpathy:igvf16_peaks_10x5
md5sum
fc185b4d60d8b8b5189fc29d7533e43d
Content MD5sum
9b6b388b6541db052e6f237c48b688d1
File Size
2.8 MB
Submitted File Name
/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf16/e16l5_peaks.bed.gz
Checkfiles Version
v14
Validation Error Detail
{"validate_files": "Error [file=/home/ubuntu/igvf-restricted-files/2025/02/14/37d77363-7629-48ba-ad81-a893f5cc57cf/IGVFFI6324ICSV.bed.gz, line=340199]: chrom KI270728.1 not found [KI270728.1\t232276\t233171]\nAborting ... found error."}
Attribution
Ansuman Satpathy, Stanford

Reference Source Details

Genome Assembly
GRCh38

File Format Specifications

1 item
Page
Description
Type
Download
Standardized File Format
Preview
10X Genomics Peaks Bedfile
file format specification

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (mixed sex) induced pluripotent stem differentiated cell specimen induced to islet of Langerhans for 11 days; Homo sapiens (mixed sex) induced pluripotent stem differentiated cell specimen induced to islet of Langerhans for 3 days; ... and 6 more samples

Files This File Derives From

1 item
Accession
File Set
File Format
Content Type
Lab
File Size
Upload Status
tsv
fragments
Ansuman Satpathy, Stanford
5.4 GB
validation exempted