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IGVFFI6306WEEJ

released
validation exempted
File Set
IGVFDS0398ALPE(10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix)
Summary
GRCh38 peaks
Analysis Step Version
/analysis-step-versions/699d6738-4033-4afc-b6f3-1d82a80e0b41/
File Format
bed
Content Type
peaks
Aliases
ansuman-satpathy:igvf17_peaks_10x4
md5sum
906f21327b01babe0d0ab034e9ccb990
Content MD5sum
d885272b7bd582f3decc0af851192406
File Size
3.2 MB
Submitted File Name
/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf17/e17l4_peaks.bed
Checkfiles Version
v14
Validation Error Detail
{"md5sum": "original md5sum d885272b7bd582f3decc0af851192406 does not match newly calculated md5sum 906f21327b01babe0d0ab034e9ccb990.", "validate_files": "Error [file=/home/ubuntu/igvf-files/2025/01/28/422c317f-81f0-4645-9747-eaed044e5914/IGVFFI6306WEEJ.bed.gz, line=396023]: chrom KI270727.1 not found [KI270727.1\t52075\t52954]\nAborting ... found error."}

Reference Source Details

Genome Assembly
GRCh38

File Format Specifications

Samples

5 items
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: RUES2 differentiated cell specimen induced to gastrula for 2 days, female, Homo sapiens; RUES2 differentiated cell specimen induced to gastrula for 1 day, female, Homo sapiens; ... and 10 more samples
MultiplexedSample
multiplexed sample: RUES2 differentiated cell specimen induced to gastrula for 2 days, female, Homo sapiens; RUES2 differentiated cell specimen induced to gastrula for 1 day, female, Homo sapiens; ... and 10 more samples
MultiplexedSample
multiplexed sample: RUES2 differentiated cell specimen induced to gastrula for 2 days, female, Homo sapiens; RUES2 differentiated cell specimen induced to gastrula for 1 day, female, Homo sapiens; ... and 10 more samples
MultiplexedSample
multiplexed sample: RUES2 differentiated cell specimen induced to gastrula for 2 days, female, Homo sapiens; RUES2 differentiated cell specimen induced to gastrula for 1 day, female, Homo sapiens; ... and 10 more samples
MultiplexedSample
multiplexed sample: RUES2 differentiated cell specimen induced to gastrula for 2 days, female, Homo sapiens; RUES2 differentiated cell specimen induced to gastrula for 1 day, female, Homo sapiens; ... and 10 more samples

Files This File Derives From

1 item
Accession
File Set
File Format
Content Type
Lab
File Size
Upload Status
tsv
fragments
Ansuman Satpathy, Stanford
5.8 GB
validation exempted

Attribution

Award
HG011972
Principal Investigator(s)
Contact P.I.
Jesse Engreitz
Lab
Ansuman Satpathy, Stanford