Home

IGVFFI6179OMKY

released
validated
File Set
IGVFDS2308SBSR(lentiMPRA: reporter experiment, reporter experiment barcode)
Summary
GRCh38 reporter experiment
Analysis Step Version
/analysis-step-versions/c3ad4525-87d0-4d22-9410-f3e616d7cb9c/
File Format
tsv
Content Type
reporter experiment
md5sum
57e59850a391920a84beb3cc1f5eb355
Content MD5sum
a294dfcc19a69c06504bea78f7730e77
File Size
18 MB
Submitted File Name
"/data/cephfs-2/unmirrored/groups/kircher/IGVF_data_submssion_TM/proximalPromotor/mprasnakeflow/results/experiment/HEK293T/reporter_experiment.oligo.HEK293T.defaultAssignment.default.min_oligo_threshold_10.tsv.gz"
Checkfiles Version
Legacy version of checkfiles
Submitter Comment
MPRAsnakeflow v0.3.0
Attribution
Nadav Ahituv, UCSF

Reference Source Details

Genome Assembly
GRCh38

File Format Specifications

1 item
Page
Description
Type
Download
Preview
IGVF MPRA reporter experiment format
file format specification

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
Homo sapiens (female) HEK293T pooled cell specimen transduced (lentivirus) with a reporter library

Files This File Derives From

61 items
fastq
reads
Nadav Ahituv, UCSF
340 MB
validated
fastq
reads
Nadav Ahituv, UCSF
376 MB
validated
fastq
reads
Nadav Ahituv, UCSF
92 MB
validated
fastq
reads
Nadav Ahituv, UCSF
30 MB
validated
fastq
reads
Nadav Ahituv, UCSF
87 MB
validated
fastq
reads
Nadav Ahituv, UCSF
787 MB
validated
fastq
reads
Nadav Ahituv, UCSF
875 MB
validated
fastq
reads
Nadav Ahituv, UCSF
2.4 GB
validated
fastq
reads
Nadav Ahituv, UCSF
156 MB
validated
fastq
reads
Nadav Ahituv, UCSF
431 MB
validated