IGVFFI6176ZPSR

released
validated
1{
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10    "aliases": [
11        "ansuman-satpathy:igvf16_multiseq_count_matrix_10x3"
12    ],
13    "analysis_step_version": "/analysis-step-versions/49020a48-9224-4d9c-8d55-2264aaf17a1f/",
14    "assay_titles": [
15        "10x multiome with MULTI-seq"
16    ],
17    "audit": {},
18    "award": {
19        "@id": "/awards/HG011972/",
20        "component": "functional characterization"
21    },
22    "barcode_map_for": [],
23    "checkfiles_version": "v16",
24    "content_md5sum": "69b88bd73acd804f4d236aa4478b9030",
25    "content_type": "cell hashing barcodes",
26    "controlled_access": false,
27    "creation_timestamp": "2025-02-19T23:37:53.639923+00:00",
28    "derived_from": [
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30        "/sequence-files/IGVFFI1663YZEY/",
31        "/sequence-files/IGVFFI4810PZFZ/",
32        "/sequence-files/IGVFFI9929REXA/",
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58        "file_set_type": "intermediate analysis",
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60            {
61                "@id": "/multiplexed-samples/IGVFSM5332SKYG/",
62                "@type": [
63                    "MultiplexedSample",
64                    "Sample",
65                    "Item"
66                ],
67                "accession": "IGVFSM5332SKYG",
68                "classifications": [
69                    "differentiated cell specimen",
70                    "multiplexed sample"
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72                "disease_terms": [],
73                "modifications": [],
74                "sample_terms": [
75                    {
76                        "@id": "/sample-terms/EFO_0004905/",
77                        "status": "released",
78                        "term_name": "induced pluripotent stem cell"
79                    }
80                ],
81                "status": "released",
82                "summary": "multiplexed sample: Homo sapiens (mixed sex) induced pluripotent stem differentiated cell specimen induced to islet of Langerhans for 11 days; Homo sapiens (mixed sex) induced pluripotent stem differentiated cell specimen induced to islet of Langerhans for 3 days; ... and 6 more samples",
83                "taxa": "Homo sapiens",
84                "treatments": []
85            }
86        ],
87        "status": "released",
88        "summary": "10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix"
89    },
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91    "gene_list_for": [],
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93    "input_file_for": [],
94    "integrated_in": [],
95    "lab": {
96        "@id": "/labs/ansuman-satpathy/",
97        "title": "Ansuman Satpathy, Stanford"
98    },
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100    "md5sum": "8d53d12915179f1e0a2c3337c70f196e",
101    "quality_metrics": [],
102    "release_timestamp": "2025-03-22T00:44:27.700501+00:00",
103    "s3_uri": "s3://igvf-files/2025/02/19/a307ccef-5f83-4391-b94f-604bc6782a34/IGVFFI6176ZPSR.tsv.gz",
104    "schema_version": "15",
105    "status": "released",
106    "submitted_by": {
107        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
108        "title": "Christopher Mcginnis"
109    },
110    "submitted_file_name": "/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/multi_tsvs/e16l3_tag_mtx.tsv.gz",
111    "summary": "cell hashing barcodes",
112    "upload_status": "validated",
113    "uuid": "a307ccef-5f83-4391-b94f-604bc6782a34",
114    "workflow": {
115        "@id": "/workflows/IGVFWF1453HVEC/",
116        "name": "Satpathy Cell Ranger",
117        "uniform_pipeline": false
118    }
119}