IGVFFI6173TVLL

released
validation exempted
File Set
IGVFDS7649PCRX(10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix)
Summary
fragments
Analysis Step Version
File Format
tsv
Content Type
fragments
Aliases
ansuman-satpathy:igvf16_fragments_10x2
md5sum
619f99cf6d7e8ced9a4f4f45ceabfd58
Content MD5sum
7cb01d980190d9d30e3e1c65138165f1
File Size
5.5 GB
Submitted File Name
/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf16/e16l2_fragments.tsv.gz
Checkfiles Version
Validation Error Detail
{"tabular_file_error": {"schema": null, "error_number_limit": 1000, "number_of_errors": 1000, "extra-cell": {"count": 1000, "description": "This row has more values compared to the header row (the first row in the data source). A key concept is that all the rows in tabular data must have the same number of columns.", "details": [{"row_number": 52, "field_number": 2, "note": ""}, {"row_number": 52, "field_number": 3, "note": ""}]}, "error_types": ["extra-cell"]}}

File Format Specifications

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (mixed sex) induced pluripotent stem differentiated cell specimen induced to islet of Langerhans for 11 days; Homo sapiens (mixed sex) induced pluripotent stem differentiated cell specimen induced to islet of Langerhans for 3 days; ... and 6 more samples

Files This File Derives From

16 items
fastq
reads
Ansuman Satpathy, Stanford
3.9 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
7.2 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
4.0 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
1.6 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
1.6 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
7.0 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
7.2 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
4.0 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
7.2 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
7.0 GB
validated

Files Derived From This File

2 items
tbi
index
index of IGVFFI6173TVLL
Ansuman Satpathy, Stanford
1.7 MB
validated
bed
peaks
GRCh38 peaks
Ansuman Satpathy, Stanford
2.8 MB
validation exempted

Attribution