{
"@context": "/terms/",
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"File",
"Item"
],
"accession": "IGVFFI6162WULK",
"aliases": [
"jesse-engreitz:auxiliary_sortparams_file_CRUDO_KITLG-Auxin0hrs-FF3"
],
"assay_titles": [
"CRISPR FlowFISH screen"
],
"audit": {
"NOT_COMPLIANT": [
{
"category": "missing file format specifications",
"detail": "Tabular file [IGVFFI6162WULK](/tabular-files/IGVFFI6162WULK/) has no `file_format_specifications`. Tabular files are expected to link to a file format specifications document describing the headers of the file.",
"level": 50,
"level_name": "NOT_COMPLIANT",
"name": "audit_tabular_file_no_file_format_specifications",
"path": "/tabular-files/IGVFFI6162WULK/"
}
]
},
"award": {
"@id": "/awards/HG011972/",
"component": "functional characterization"
},
"barcode_map_for": [],
"content_md5sum": "a1304cf4a89259ff65b1b7ed8bb0c02c",
"content_type": "sample sort parameters",
"controlled_access": false,
"creation_timestamp": "2024-07-03T00:35:39.395979+00:00",
"file_format": "tsv",
"file_set": {
"@id": "/auxiliary-sets/IGVFDS0329USVJ/",
"accession": "IGVFDS0329USVJ",
"file_set_type": "cell sorting",
"samples": [
{
"@id": "/in-vitro-systems/IGVFSM2914OOTJ/",
"accession": "IGVFSM2914OOTJ",
"classifications": [
"cell line"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0002824/",
"term_name": "HCT116"
}
],
"summary": "HCT116 cell line, male, Homo sapiens (sorting details: FACS bin A for 0-10% expression of KITLG) modified with CRISPRi Sp-dCas9-KOX1-KRAB, transfected with a guide library",
"taxa": "Homo sapiens"
},
{
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"classifications": [
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],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0002824/",
"term_name": "HCT116"
}
],
"summary": "HCT116 cell line, male, Homo sapiens (sorting details: FACS bin B for 10-20% expression of KITLG) modified with CRISPRi Sp-dCas9-KOX1-KRAB, transfected with a guide library",
"taxa": "Homo sapiens"
},
{
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"cell line"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0002824/",
"term_name": "HCT116"
}
],
"summary": "HCT116 cell line, male, Homo sapiens (sorting details: FACS bin C for 35-45% expression of KITLG) modified with CRISPRi Sp-dCas9-KOX1-KRAB, transfected with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM3068ZYXS/",
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"classifications": [
"cell line"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0002824/",
"term_name": "HCT116"
}
],
"summary": "HCT116 cell line, male, Homo sapiens (sorting details: FACS bin D for 55-65% expression of KITLG) modified with CRISPRi Sp-dCas9-KOX1-KRAB, transfected with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM0596STHT/",
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"classifications": [
"cell line"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0002824/",
"term_name": "HCT116"
}
],
"summary": "HCT116 cell line, male, Homo sapiens (sorting details: FACS bin E for 80-90% expression of KITLG) modified with CRISPRi Sp-dCas9-KOX1-KRAB, transfected with a guide library",
"taxa": "Homo sapiens"
},
{
"@id": "/in-vitro-systems/IGVFSM7141IWGF/",
"accession": "IGVFSM7141IWGF",
"classifications": [
"cell line"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0002824/",
"term_name": "HCT116"
}
],
"summary": "HCT116 cell line, male, Homo sapiens (sorting details: FACS bin F for 80-100% expression of KITLG) modified with CRISPRi Sp-dCas9-KOX1-KRAB, transfected with a guide library",
"taxa": "Homo sapiens"
}
],
"summary": "cell sorting for CRISPR interference FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci, CRISPR interference FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci, ... and 4 more measurement sets"
},
"file_size": 490,
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"href": "/tabular-files/IGVFFI6162WULK/@@download/IGVFFI6162WULK.tsv.gz",
"input_file_for": [
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"integrated_in": [],
"lab": {
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"title": "Jesse Engreitz, Stanford"
},
"loci_list_for": [],
"md5sum": "eec1899885383fd227cd438f9f5e7df7",
"release_timestamp": "2024-07-10T20:28:16.843162+00:00",
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"schema_version": "13",
"status": "released",
"submitted_by": {
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"title": "Benjamin Doughty"
},
"submitted_file_name": "/oak/stanford/groups/engreitz/Projects/Cohesin/240410_IGVF_upload/sortparams2/220104B013_4.tsv.gz",
"summary": "sample sort parameters",
"upload_status": "validated",
"uuid": "c82a6a65-b055-4b1c-b311-13189bebe0cd"
}