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IGVFFI5988KABT

released
validation exempted
File Set
IGVFDS4963SRAJ(10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix)
Summary
GRCh38 peaks
Analysis Step Version
/analysis-step-versions/699d6738-4033-4afc-b6f3-1d82a80e0b41/
File Format
bed
Content Type
peaks
Aliases
ansuman-satpathy:igvf18_peaks_10x2
md5sum
6e6ced2ef8d4b71eedd05f3f4fc5612f
Content MD5sum
c499d6d93ee6d26d30377a81f829ce6f
File Size
1.7 MB
Submitted File Name
/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf18/e18l2_peaks.bed
Checkfiles Version
v14
Validation Error Detail
{"md5sum": "original md5sum c499d6d93ee6d26d30377a81f829ce6f does not match newly calculated md5sum 6e6ced2ef8d4b71eedd05f3f4fc5612f.", "validate_files": "Error [file=/home/ubuntu/igvf-files/2025/01/28/b7af376b-6ae6-4545-935e-4e28a25e1ffb/IGVFFI5988KABT.bed.gz, line=202909]: chrom KI270728.1 not found [KI270728.1\t232286\t233180]\nAborting ... found error."}

Reference Source Details

Genome Assembly
GRCh38

File Format Specifications

Samples

4 items
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: IMR-90 cell line, female, Homo sapiens; MCF-7 cell line, female, Homo sapiens; ... and 17 more samples
MultiplexedSample
multiplexed sample: IMR-90 cell line, female, Homo sapiens; MCF-7 cell line, female, Homo sapiens; ... and 17 more samples
MultiplexedSample
multiplexed sample: IMR-90 cell line, female, Homo sapiens; MCF-7 cell line, female, Homo sapiens; ... and 17 more samples
MultiplexedSample
multiplexed sample: IMR-90 cell line, female, Homo sapiens; MCF-7 cell line, female, Homo sapiens; ... and 17 more samples

Files This File Derives From

1 item
Accession
File Set
File Format
Content Type
Lab
File Size
Upload Status
tsv
fragments
Ansuman Satpathy, Stanford
5.2 GB
validation exempted

Attribution

Award
HG011972
Principal Investigator(s)
Contact P.I.
Jesse Engreitz
Lab
Ansuman Satpathy, Stanford