IGVFFI5972QBNS

released
validated
File Set
IGVFDS0021NCLH(CRISPR base editing FACS screen: guide quantifications, variant effects)
Summary
guide quantifications
Analysis Step Version
File Format
csv
Content Type
guide quantifications
Aliases
richard-sherwood:18loci_ABE_LDLuptake_bean_mapped_counts
md5sum
81626e4f654f3606092491e48731fb57
Content MD5sum
c57bfc92ee01655ab21c4b5dd0317000
File Size
336 KB
Submitted File Name
18loci_uptake_bean_mapped_count.csv.gz
Checkfiles Version

Samples

20 items
Sample Terms
Summary
InVitroSystem
HepG2 cell line, male, Homo sapiens (sorting details: Sorted for Bottom 20% LDL-C uptake) modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library (MOI of 0.5)
InVitroSystem
HepG2 cell line, male, Homo sapiens (sorting details: Sorted for Bottom 20-40% LDL-C uptake) modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library (MOI of 0.5)
InVitroSystem
HepG2 cell line, male, Homo sapiens (sorting details: Sorted for Top 20% LDL-C uptake) modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library (MOI of 0.5)
InVitroSystem
HepG2 cell line, male, Homo sapiens (sorting details: Sorted for Bottom 20-40% LDL-C uptake) modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library (MOI of 0.5)
InVitroSystem
HepG2 cell line, male, Homo sapiens (sorting details: Sorted for Bottom 20% LDL-C uptake) modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library (MOI of 0.5)
InVitroSystem
HepG2 cell line, male, Homo sapiens modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library (MOI of 0.5)
InVitroSystem
HepG2 cell line, male, Homo sapiens modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library (MOI of 0.5)
InVitroSystem
HepG2 cell line, male, Homo sapiens (sorting details: Sorted for Top 20-40% LDL-C uptake) modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library (MOI of 0.5)
InVitroSystem
HepG2 cell line, male, Homo sapiens (sorting details: Sorted for Top 20-40% LDL-C uptake) modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library (MOI of 0.5)
InVitroSystem
HepG2 cell line, male, Homo sapiens (sorting details: Sorted for Top 20-40% LDL-C uptake) modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library (MOI of 0.5)

Files This File Derives From

40 items
fastq
reads
Richard Sherwood, Brigham and Women's Hospital
7.1 MB
validated
fastq
reads
Richard Sherwood, Brigham and Women's Hospital
7.3 MB
validated
fastq
reads
Richard Sherwood, Brigham and Women's Hospital
22 MB
validated
fastq
reads
Richard Sherwood, Brigham and Women's Hospital
9.8 MB
validated
fastq
reads
Richard Sherwood, Brigham and Women's Hospital
5.6 MB
validated
fastq
reads
Richard Sherwood, Brigham and Women's Hospital
12 MB
validated
fastq
reads
Richard Sherwood, Brigham and Women's Hospital
9.3 MB
validated
fastq
reads
Richard Sherwood, Brigham and Women's Hospital
5.1 MB
validated
fastq
reads
Richard Sherwood, Brigham and Women's Hospital
17 MB
validated
fastq
reads
Richard Sherwood, Brigham and Women's Hospital
17 MB
validated

Files Derived From This File

2 items
csv
variant effects
variant effects
Richard Sherwood, Brigham and Women's Hospital
128 KB
validated
csv
guide quantifications
guide quantifications
Richard Sherwood, Brigham and Women's Hospital
185 KB
validated

Attribution