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IGVFFI5883SVNN

preview
validated
This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS7340YDHF(CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci)
Summary
GRCh38 GENCODE 32 unfiltered global differential expression
Analysis Step Version
/analysis-step-versions/4cfc022a-ff63-4d13-99f7-257a6bfe4bd7/
File Format
csv
Content Type
unfiltered global differential expression
Aliases
gary-hon:WTC11_TF_Perturb_Seq_Pilot_iPSC_Lenti_PrimaryAnalysis_DE_global
md5sum
f46b358fe0c565d9a067694d7f084a98
Content MD5sum
3ba6842a47309f925c538656312e4bc9
File Size
288 KB
Submitted File Name
/project/GCRB/Hon_lab/s215194/IGVF/data_submission/reference_files/WTC11_TF_Perturb_Seq_Pilot_iPSC_Lenti_PrimaryAnalysis_DE_global.csv.gz
Checkfiles Version
v16
Attribution
Gary Hon, UT

Reference Source Details

Genome Assembly
GRCh38
Transcriptome Annotation
GENCODE 32

File Format Specifications

1 item
Page
Description
Type
Download
Standardized File Format
Preview
pySpade Differential Expression table definitions
file format specification

Samples

4 items
Sample Terms
Summary
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) cell line (cellular sub pool: subpool_LW287) modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) cell line (cellular sub pool: subpool_LW289) modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) cell line (cellular sub pool: subpool_LW286) modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library
InVitroSystem
Homo sapiens (male) GM25256 (WTC-11) cell line (cellular sub pool: subpool_LW288) modified with CRISPRi Sp-dCas9, transduced (lentivirus) with a guide library

Files This File Derives From

2 items
pkl
raw feature barcode matrix
Gary Hon, UT
589 MB
validated
hdf5
filtered feature barcode matrix
Gary Hon, UT
429 MB
validated